Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B08
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    29   0.39 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   0.68 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.8  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.3  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   8.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   8.4  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 145 ALKRVKQLKRTNFPDIMT-SKDSVSWEKNGKNSKTVRYVPIQLEAGHPSTSTPIEPVNQG 321
           A  RV+ L R      +T SK  VSW  NG  ++T  Y P    A H      +   NQ 
Sbjct: 42  ATVRVEALDRQQSHSRITISKQCVSWIGNGHAAETTLYFP----ASHQQIQLTLHLENQN 97

Query: 322 SRIRNVPIKYIPVL 363
           S + ++ I    VL
Sbjct: 98  SIVDSIHINADTVL 111


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 280 HPSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPAR 390
           HPS S+  +PV+  S   N+P   + ++ N S TPA+
Sbjct: 268 HPSLSS--QPVSVPSNTINIPTDSLSIVSNPSQTPAK 302


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +1

Query: 97  KRDRADDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSVSWEKNGKNSKTVRYVPIQLEA 276
           K+   +DE  ++E LP+  + K+    +F   + S  + + EK    ++  +    + E 
Sbjct: 72  KKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSA-TQASKSKNDEFEL 130

Query: 277 GHPSTSTPIEPVNQGSRIRNVPIKY 351
           G       + P+N G   +NVP KY
Sbjct: 131 GGEENEDEM-PLN-GEFNKNVPAKY 153


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 426 NDWAHWCVYPWFP 388
           ND  H C++PW P
Sbjct: 501 NDSLHHCIFPWLP 513


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 112 DDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSVSWEKNGKNSKTV 249
           DD Y   E+  AL+ V+ L     P+I T   S     N   +  V
Sbjct: 361 DDNYGVQEQFSALQAVQMLMIEYAPEIATLASSTDNRSNSTYASNV 406


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 292 MYSGDQPPIVLAHNERFYY 236
           MY    PP+++ H +RF+Y
Sbjct: 380 MYIESLPPVLILHLKRFFY 398


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 121 YSSDEELPALKRVKQLKRTNFPDIMTSKDSV 213
           +S D +L  L  +  L RTN PD++   DS+
Sbjct: 854 HSKDRKLNTLA-LSSLLRTNHPDVLAVLDSI 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,054
Number of Sequences: 5004
Number of extensions: 44716
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)