Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B08
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4539| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.71 
SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   31   0.93 
SB_27433| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)                      30   1.6  
SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6)                      30   1.6  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 29   2.2  
SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)                 29   3.8  
SB_24010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)                       28   5.0  
SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   5.0  
SB_27192| Best HMM Match : SH3_1 (HMM E-Value=0.53)                    28   6.6  
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_43586| Best HMM Match : HALZ (HMM E-Value=1.8)                      27   8.7  
SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)                  27   8.7  
SB_30222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_4539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 124 SSDEELPALKR-VKQLKRTNFPD-IMTSKDSVSWEKNGKNSKTVRYVPIQ 267
           S D    + +R V  L   +FP+ ++ + DSVS+++N     TVR +PI+
Sbjct: 51  SKDHTCSSWRRIVHALSSFHFPEQVLQALDSVSYDRNSGKWNTVRLIPIE 100


>SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGT-PARKP 396
           P TSTP+ P+ + + I    I+  P+ E G     AR+P
Sbjct: 124 PETSTPVTPIQETTPIHQTSIRETPISETGGVVLRARRP 162


>SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 350

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 157 VKQLKRTNFPD-IMTSKDSVSWEKNGKNSKTVRYVPIQLE 273
           V  L   +FP+ ++ + DSVS+++N     TVR +PI+ +
Sbjct: 43  VHALSSFHFPEQVLQALDSVSYDRNSGKWNTVRLIPIEFK 82


>SB_27433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 31  VLTYIRGLLGWVDENPTLRTSFKRDRADD--EYSSDEELPALKRVKQLKRT-NFPDIMTS 201
           +LT++  ++ +  +N     +     A +   +SS +E+P+L+ VKQ + T N   ++  
Sbjct: 2   LLTFLSRIISYEKQNKMNLNNVSMIMAPNLFHFSSSKEMPSLREVKQAQATVNLVRMLIK 61

Query: 202 KDSVSWEKNGKNSKTVRYV 258
             ++ W   G     VRY+
Sbjct: 62  YQNILWTIPGFMVMQVRYL 80


>SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)
          Length = 421

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLENG 372
           P TSTP+ P+ + + I    I+  P+ E G
Sbjct: 124 PETSTPVTPIQETTPIHQTSIRETPISETG 153


>SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6)
          Length = 259

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLENG 372
           P TSTP+ P+ + + I    I+  P+ E G
Sbjct: 143 PETSTPVTPIQETTPIHQTSIRETPISETG 172


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
 Frame = +1

Query: 97  KRDRADDEYSSDEELPALKRVKQLKRT-NFPDIMTSKDSVSWEKNGKNSKTVRYVP--IQ 267
           ++++ D EY  D+E  A K+ + L  T N    M ++DS+  ++  + ++  +     I+
Sbjct: 48  RKEQKDSEYELDDEQRARKKQRNLAATLNAQRAMMAEDSLFAQRQRERARERQRASRLIR 107

Query: 268 LEAGHPSTSTPIEPVNQGSRIRNVPIKYIPVLENG 372
            +   PST+T     N    + N+ +K +  L  G
Sbjct: 108 KQQRQPSTTTAFFCTNTIPGV-NMTVKVVKSLMTG 141


>SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)
          Length = 145

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 97  KRDRADDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSVSWEKNGKNSK 243
           ++ + D EY  D+E  A KR + L+  N    M ++DS+  ++  + ++
Sbjct: 73  RKKQKDSEYELDDEQRARKRQRNLETLNAQRAMMAEDSLFAQRQRERAR 121


>SB_24010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 97  KRDRADDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSV 213
           ++ + D EY  D+E  A KR + L+  N    M ++DS+
Sbjct: 7   RKGQKDSEYELDDEQKARKRQRNLETLNAQRTMMAEDSL 45


>SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)
          Length = 265

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 148 LKRVKQLKRTNFPDIMTSKDSVSWEKN 228
           LKR+     T+FP + T K SVS EKN
Sbjct: 223 LKRLFYRVPTDFPTVATEKKSVSTEKN 249


>SB_36690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 306 TCESGEQD-PKCTN*IHTSIGEWIRDSSTETKDTHTS 413
           TC  G +D  +  N  HT+ G+  RD S  T  THT+
Sbjct: 173 TCGQGHRDMSRNNNKTHTAGGQGHRDMSRNTYKTHTA 209



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 294 NSN*TCESGEQD----PKCTN*IHTSIGEWIRDSSTETKDTHTS 413
           N+N T  +G Q+     + TN  HT+ G+  RD S  T  THT+
Sbjct: 94  NTNKTHTAGGQENRDMSRNTNKTHTADGQGHRDMSRSTNKTHTA 137


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 97  KRDRADDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSV 213
           ++ + D EY  D+E  A KR + L+  N    M ++DS+
Sbjct: 72  RKGQKDSEYELDDEQRARKRQRNLETLNAQRAMMAEDSL 110


>SB_27192| Best HMM Match : SH3_1 (HMM E-Value=0.53)
          Length = 96

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  LRTSFKRDRADDEYSSDEE-LPALKRVKQLKRTNFPDIMTSKDSVSWEKNGKNSKTVRY 255
           + TS KR++    YSS++E    +K++  L+  +F  +    +S      G+N++T +Y
Sbjct: 1   MATSEKREKVPSYYSSEQERSKKMKKLHNLETGDFLVVAKPFESAEGWLVGRNNRTGQY 59


>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
 Frame = +1

Query: 43  IRGLLGWVDENPTLRTSFKRDRAD------DEYSSDEELPALKRVKQLKRTNFPDIMT-S 201
           +R LLGW    PT   S + D         DE   + + P L++++   +++F D  T +
Sbjct: 593 VRSLLGWALLGPTEECSTQADGGSVNFVRLDESEVEADEPLLRKLESFWKSDFVDTCTVT 652

Query: 202 KDSVSWEKNGKNSKTVRYVPIQLEAGHPSTSTP 300
           + S+S E     +K      + +  GH   S P
Sbjct: 653 QASMSVEDKRALAKIEE--SVMMVDGHYQMSLP 683


>SB_43586| Best HMM Match : HALZ (HMM E-Value=1.8)
          Length = 281

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLE 366
           P TSTP+ P+ + + I    I+  P+ E
Sbjct: 57  PETSTPVTPIQETTPIHQASIRETPISE 84


>SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)
          Length = 505

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLE 366
           P TSTP+ P+ + + I    I+  P+ E
Sbjct: 106 PETSTPVTPIQETTPIHQTSIRETPISE 133


>SB_30222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 350 TYQYWRMDQGLQHGNQGYTH 409
           +YQY  ++ G QHGN   TH
Sbjct: 71  SYQYLFIEHGTQHGNSDNTH 90


>SB_21719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 PSTSTPIEPVNQGSRIRNVPIKYIPVLE 366
           P TSTP+ P+ + + I    I+  P+ E
Sbjct: 105 PETSTPVTPIQETTPIHQASIRETPISE 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,992
Number of Sequences: 59808
Number of extensions: 320189
Number of successful extensions: 795
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)