Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B08
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 396 WFPCWSP*SILQYWY 352
           +F CW+P  ++  WY
Sbjct: 269 FFICWTPYYVMSLWY 283


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 396 WFPCWSP*SILQYWYVFN 343
           WF  W+P  ++ +  +FN
Sbjct: 287 WFMAWTPYLVINFSGIFN 304


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 396 WFPCWSP*SILQYWYVFN 343
           WF  W+P  ++ +  +FN
Sbjct: 37  WFMAWTPYLVINFSGIFN 54


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 24 EVRVDLYTRSSWL 62
          + RVD++ R SW+
Sbjct: 31 DFRVDMFVRQSWI 43


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 405 VYPWFPCWSP*SILQYWYVF 346
           V  +F CW+P  + +  YV+
Sbjct: 266 VITFFICWAPFHVQRLLYVY 285


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 302 LNL*IRGAGSEMYQLNTYQYWRMD 373
           LN  ++   SE  +LN Y  W M+
Sbjct: 78  LNFFLKNDESESPKLNPYPNWEMN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,868
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)