Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B08
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    30   1.0  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    28   4.1  
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    27   7.2  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    27   9.5  

>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 289 TSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPARKPRIHTPVRP 420
           ++ P++P+ + SRI  VP   +P++   S + +  P I    RP
Sbjct: 184 SAAPLDPIKEVSRIEPVPQADLPIVHPDSSSTSELPLIRRMRRP 227


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +1

Query: 100 RDRADDEYSSDEELPALKRVKQLKRTNFPDIMT----SKDSVSWEKNGKNSKTVRYVPIQ 267
           R++ D   +S  +  A++ ++ L+ +    ++     SK  ++W K     KT+RY P +
Sbjct: 645 REKLDSSIASFRKKLAIRNLEFLQVSGITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPE 704

Query: 268 LEAG 279
           + AG
Sbjct: 705 IVAG 708


>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 TPIEPVNQGSRIRNVPIKYIPVLENGSGTPARKP 396
           +PI   NQ SR ++     + VL NG+ +P+R P
Sbjct: 344 SPIRRRNQNSRSKSPSRSPVRVLGNGNRSPSRSP 377


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 223 KNGKNSKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPIKYIP 357
           KNGK     RY+P  L AG   T++   PV+  ++  + P+   P
Sbjct: 392 KNGKLQSYFRYLP-DLSAGKKKTTS--SPVSSSAKTTSTPVSSSP 433


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +1

Query: 58  GWVDENPTLRTSFKRDRADDEYSSDEELPALKRVKQLKRTNFPDIMTSKDSVSWEKN--G 231
           G   + P+L+T F+  +       D  + A + +K+       D+MT  D  +  KN  G
Sbjct: 91  GAAKKEPSLKTQFQTCQEAFVSIGDSLMSAFEELKRDPHIATYDVMTCTDHTTQVKNLVG 150

Query: 232 KN----SKTVRYVPIQLE 273
           KN    SKT+  + +Q+E
Sbjct: 151 KNTDVASKTLIEMTMQME 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,990
Number of Sequences: 28952
Number of extensions: 230455
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)