Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B07
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156     31   0.74 
12_01_0419 - 3316866-3318172,3318249-3318360                           29   2.3  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    29   3.0  
02_05_0149 + 26290236-26290880                                         28   6.9  
10_08_0222 - 15983756-15984313                                         27   9.2  
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272...    27   9.2  
05_06_0078 - 25412770-25413852                                         27   9.2  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    27   9.2  
04_01_0464 + 6006021-6006082,6006249-6006519                           27   9.2  

>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
          Length = 405

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -2

Query: 623 GMSEHWSAIXCVSSGITSVGDNGSGAIGSVGDHGGGY 513
           G S HW A  C  S   + G  G GA G  G  GGGY
Sbjct: 116 GDSCHW-ARECPQSVPATGGGGGGGAFGGSGGGGGGY 151


>12_01_0419 - 3316866-3318172,3318249-3318360
          Length = 472

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 139 DSLPTASEPTASQPTASEPTASQP 210
           +  PTA+EP    P A EP A++P
Sbjct: 330 EETPTATEPEPEPPAAEEPPAAEP 353


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 617 SEHWSAIXCVSSGITSVGDNGSGAIGSVGDHGGGYVT 507
           +E W  + CV S ITS+  N +   G +G+  G + +
Sbjct: 63  NEGWQGVECVVSNITSITLNAANLGGQLGNTLGNFTS 99


>02_05_0149 + 26290236-26290880
          Length = 214

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 557 GSGAIGSVGDHGGGY 513
           GSG IG  G++GGGY
Sbjct: 148 GSGGIGGYGNYGGGY 162


>10_08_0222 - 15983756-15984313
          Length = 185

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 584 SGITSVGDNGSGAIGSVGDHGGGY 513
           SG  S   +GSG  G  G +GGGY
Sbjct: 126 SGSGSGSGSGSGQAGGYGPYGGGY 149


>09_04_0608 +
           18924648-18924899,18926341-18926435,18926903-18927236,
           18927345-18927582,18927813-18928069
          Length = 391

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 587 SSGITSVGDNGSGAIGSVGDHGGG 516
           S G+   G  GSG +G  G  GGG
Sbjct: 22  SVGLAGAGGGGSGGVGGGGGGGGG 45


>05_06_0078 - 25412770-25413852
          Length = 360

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 587 SSGITSVGDNGSGAIGSVGDHGGGYVT 507
           S+GIT VG  G G  G  GD  GG +T
Sbjct: 223 STGITGVGGGGGGISG--GDGDGGCIT 247


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 593 CVSSGITSVGDNGSGAIGSVGD 528
           C  +G  S    GSG +GSVGD
Sbjct: 55  CRDAGCASSSGRGSGVVGSVGD 76


>04_01_0464 + 6006021-6006082,6006249-6006519
          Length = 110

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 575 TSVGDNGSGAIGSVGDHGGGYVTDQ 501
           + VG +G G+    GDHG G  T+Q
Sbjct: 40  SGVGGDGDGSERGTGDHGAGSGTEQ 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.123    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,988,916
Number of Sequences: 37544
Number of extensions: 65959
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)