Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B07
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he...    32   0.36 
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    31   0.82 
At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similari...    31   0.82 
At5g46730.1 68418.m05757 glycine-rich protein                          29   3.3  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    28   5.8  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    28   5.8  
At3g13065.1 68416.m01632 leucine-rich repeat transmembrane prote...    27   7.7  

>At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA
           helicase, putative nearly identical to HUA enhancer 2
           [Arabidopsis thaliana] GI:16024936
          Length = 995

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 578 ITSVGDNGSGAIGSVGDHGGGYVTDQLL 495
           + +V  N S   GS   HGGGY+ D LL
Sbjct: 626 VVNVVKNSSVGTGSASSHGGGYIVDTLL 653


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 611 HWSAIXCVSSGITSVGDNGSGAIGS 537
           +W  + C S G+TS+  NG G +GS
Sbjct: 46  NWYGVTCSSGGVTSIDLNGFGLLGS 70


>At1g69295.1 68414.m07947 beta-1,3-glucanase-related low similarity
           to elicitor inducible beta-1,3-glucanase NtEIG-E76
           [Nicotiana tabacum] GI:11071974
          Length = 222

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 130 TATDSLPTASEPTASQPTASEPTASQPTA 216
           T T   PT   PT   PT   PT+  PT+
Sbjct: 121 TPTSGTPTTGTPTTGTPTTGTPTSGTPTS 149



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 130 TATDSLPTASEPTASQPTASEPTASQPTA 216
           T T   PT+  PT   PT   PT   PT+
Sbjct: 116 TPTTGTPTSGTPTTGTPTTGTPTTGTPTS 144



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 130 TATDSLPTASEPTASQPTASEPTASQPT 213
           T T   PT   PT+  PT   PT   PT
Sbjct: 111 TPTTGTPTTGTPTSGTPTTGTPTTGTPT 138



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 130 TATDSLPTASEPTASQPTASEPTASQPT 213
           +++   PT   PT   PT+  PT   PT
Sbjct: 106 SSSSGTPTTGTPTTGTPTSGTPTTGTPT 133



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 130 TATDSLPTASEPTASQPTASEPTASQP 210
           T T   PT   PT   PT+  PT+  P
Sbjct: 126 TPTTGTPTTGTPTTGTPTSGTPTSGFP 152


>At5g46730.1 68418.m05757 glycine-rich protein 
          Length = 290

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 566 GDNGSGAIGSVGDHGGGY 513
           G  G GA G  G HGGGY
Sbjct: 216 GSGGGGAYGGGGAHGGGY 233


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 611 HWSAIXCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 498
           H+ A+   ++G+  V   GS A+  V GDH G + TDQ+
Sbjct: 101 HFGAV--TTAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 137


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 611 HWSAIXCVSSGITSVGDNGSGAIGSV-GDHGGGYVTDQL 498
           H+ A+   ++G+  V   GS A+  V GDH G + TDQ+
Sbjct: 94  HFGAV--TTAGMLFVLGGGSDAVSPVTGDHDGTFATDQV 130


>At3g13065.1 68416.m01632 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich repeat transmembrane
           protein kinase 1 GB:AAC27894 from [Zea mays]
          Length = 646

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 614 EHWSAIXCVSSGITSVGDNGSGAIGSVG 531
           + W  I C  S +T +  +G G  GS+G
Sbjct: 20  DSWDGITCKGSSVTEIKVSGRGLSGSLG 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.123    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,454,830
Number of Sequences: 28952
Number of extensions: 41574
Number of successful extensions: 371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)