Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_B06
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 58 5e-09
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2) 42 4e-04
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 2.6
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_650| Best HMM Match : rve (HMM E-Value=0.00048) 28 4.5
SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3) 27 7.8
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6) 27 7.8
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07) 27 7.8
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09) 27 7.8
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = +2
Query: 239 VGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCK 418
VGV P KG + +K KA KP K + + +RR+L ++ + N+YR DL
Sbjct: 2 VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKD 61
Query: 419 ATLRRASAILRSQRP 463
+RRA AILRSQ+P
Sbjct: 62 PAMRRACAILRSQKP 76
>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
Length = 132
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 34 RTHCEHVVFGVEIGLN-RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQ 210
R +C +F E + R NV D +P+ C PCE + Y+ +Q+G EQ PP+L+
Sbjct: 38 RKYCNKGLFKGEFQEHWRVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILR 92
Query: 211 VQRLDSQESCWCRGEP 258
++E C+C +P
Sbjct: 93 SWTPHTEEGCFCEAKP 108
>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 219
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 523 LSAY-KLFRLGCGCLSLFCFNGPLG 452
+ AY + R+GC CL L C++GP G
Sbjct: 86 VEAYVRCLRMGCRCLELDCWDGPDG 110
>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 197 LHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVK 376
LH F + GV E RKG + A R +RR G++ S K++
Sbjct: 171 LHQFDEAQTLSSPRCGVTEQNMRKGRETLRDFANRLRVTTTRRVRRFVTQGSKWSHSKIR 230
Query: 377 RLLKANHYRTDLCKATLR 430
+K+ + + + +A+++
Sbjct: 231 WTIKSGDFSSKMSEASVK 248
>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
Length = 363
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 52 VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 171
V G+E N +N+ +T + P Q +PC +A Y+ VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280
>SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 86 LRFKPISTPNTTCSQCVRRQKGC 18
+R+ P S P QCV R KGC
Sbjct: 566 MRYAPQSIPQNPSFQCVIRNKGC 588
>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
Length = 382
Score = 27.5 bits (58), Expect = 7.8
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 284 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 442
YK AKA KPAK L + +K A A+ L K K +L KA H L KA + A A
Sbjct: 278 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 332
>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
Length = 169
Score = 27.5 bits (58), Expect = 7.8
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 284 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 442
YK AKA KPAK L + +K A A+ L K K +L KA H L KA + A A
Sbjct: 65 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 119
>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
Length = 653
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 37 THCEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 135
+HC+H++ G E G+ N + + D +QC+
Sbjct: 261 SHCKHILIGAEEGIYSLN-ISDHVHDMEMEQCL 292
>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
Length = 720
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 301 YQKAR*KLNPPSIQGWCQEVTV 366
YQK LNP S GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,961,603
Number of Sequences: 59808
Number of extensions: 353077
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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