Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B05
         (818 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94KS5 Cluster: Homeodomain protein JUBEL1; n=1; Hordeu...    34   3.8  
UniRef50_A1ZD63 Cluster: Sigma factor regulatory protein, FecR/P...    34   5.0  
UniRef50_Q23MH0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_Q94KS5 Cluster: Homeodomain protein JUBEL1; n=1; Hordeum
           vulgare|Rep: Homeodomain protein JUBEL1 - Hordeum
           vulgare (Barley)
          Length = 759

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -3

Query: 366 GASNKLSKLINFSVETFYTKLLPDCHSSSLNSDMRIVYHSNCWQ*VGSTPGNGEPYARLG 187
           GASN L+++ NFS +T       +  +S +N++ R  +       V   PG+G  +   G
Sbjct: 117 GASNMLAEMFNFSAQTPSGPSATELLASQMNANYRFGFRQQAPGAVAGLPGDGGWFGSAG 176

Query: 186 KGK 178
            G+
Sbjct: 177 PGR 179


>UniRef50_A1ZD63 Cluster: Sigma factor regulatory protein, FecR/PupR
           family; n=1; Microscilla marina ATCC 23134|Rep: Sigma
           factor regulatory protein, FecR/PupR family -
           Microscilla marina ATCC 23134
          Length = 688

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 303 LPDCHSSSLNSDMRIVYHSNCWQ*VGSTPGNGEPYARLGKG 181
           LPD   ++LN+D RI+Y ++ W    +   NGE + ++ KG
Sbjct: 497 LPDGSMATLNADSRIIYQTDNWDQNRNVELNGEAFFQVKKG 537


>UniRef50_Q23MH0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 457

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -3

Query: 345 KLINFSVETFYTKLLPDCHSSSLNSDMRIVYHSNCWQ 235
           +LINF  E  Y     DC SSSL+SD+RI+   +C Q
Sbjct: 128 QLINFQFEGTYQGC--DCTSSSLSSDLRIIQIGSCSQ 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,675,527
Number of Sequences: 1657284
Number of extensions: 13707953
Number of successful extensions: 22825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22824
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)