Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B05
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    27   4.2  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.8  

>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 390 SNHAHLEYGASNKLSKLINFSVETFYTKLLP 298
           S H ++E  A NK+S L+N S ET Y    P
Sbjct: 116 SQHKNIE-DALNKISDLLNKSAETLYVPDTP 145


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 385 VRLLPYFYGQLYNIIKTS 438
           +RL PY Y  LY +I+TS
Sbjct: 315 IRLAPYTYDTLYPLIQTS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,489
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)