Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B03
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    29   1.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   1.8  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.6  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = -3

Query: 555 NIYYLINSCVQYF-----RCLLFHLKTLTVTYKS*LKIL*ISFVCIKDVFTLSITR*IVL 391
           NIY LI+ C+QYF     R   FH +     +   L I+ + F  I D +  + +   VL
Sbjct: 19  NIYLLISGCLQYFYEVRKRSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTNESVWNVL 78

Query: 390 GSILFY 373
             I ++
Sbjct: 79  SIITYF 84


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -3

Query: 696 TLYNRLINVMKHEIVVNLIFYRVFLHSESYFVRSVFLVFS*ALKVYKNIYYLINSCVQYF 517
           TLY R++       + +LIF + +LH +++ + ++   +S  + V  N  Y    C+ + 
Sbjct: 45  TLYRRIVECCAS--LCSLIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLY----CLPFC 98

Query: 516 RCLLFHLKTLTVT 478
              +  +K LT T
Sbjct: 99  NAFIEFVKKLTET 111


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 578 LNTKNTDLTKYDSECKNT 631
           L+TKNT L KYD   K+T
Sbjct: 219 LSTKNTILKKYDGRFKDT 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,431
Number of Sequences: 5004
Number of extensions: 51534
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)