Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B01
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.7  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   6.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -2

Query: 616 GAESHAAGTLISHNEALNPK-GQSQAKDGGPPPTPG 512
           G  SHA G L  H        G      GGPPP PG
Sbjct: 170 GLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPG 205


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 603 CDSAPCLNGATCRLT 647
           C++ PC +G TC+LT
Sbjct: 335 CENNPCCDGKTCKLT 349


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 466 ASRARDARMAVLVASDPESAAAPRLSPVIVP 558
           A R +DA    +  +D E A AP +SP I P
Sbjct: 59  ARRHKDAHAYDMSLTDAEPALAPVMSPAIPP 89


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 580 ARSEYQQHATLRLALMEPR 636
           +R EY++H + RLAL+E R
Sbjct: 413 SRQEYEEHGSDRLALIEKR 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,209
Number of Sequences: 5004
Number of extensions: 56420
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)