Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_B01
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 520 TPGLTRQVPPFWH 482
           T G+T Q PP WH
Sbjct: 605 TKGITIQEPPQWH 617


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 568 LNPKGQSQAKDGGPPPTPGLTRQVP 494
           L P GQ  A    P P P L ++ P
Sbjct: 18  LGPAGQVLAGSSSPRPKPLLKKEYP 42


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +3

Query: 330 EGFVSCSPSPC--KNGGTCASSPRGEYYCNC 416
           EGF    P+    KN GTC   P G +   C
Sbjct: 118 EGFDGTYPTNVVVKNNGTCLYVPPGIFKSTC 148


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 565 NPKGQSQAKDGGPPPTPGLTRQVPPF 488
           +P G   A++GG P    LT+ +  F
Sbjct: 98  DPNGNVVARNGGVPQLGNLTKHLQVF 123


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 589 LISHNEALNPKGQSQAKDGGPPPTP 515
           + +   A+   G+SQ    GPPP P
Sbjct: 364 IATKENAMLLSGRSQKSTTGPPPGP 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,088
Number of Sequences: 438
Number of extensions: 4011
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)