Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A24
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 30 1.5
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 29 1.9
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 29 3.4
12_02_0445 - 19153580-19154269 28 4.4
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 28 4.4
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 28 5.9
02_02_0489 + 10869482-10871218 28 5.9
11_04_0432 + 17693438-17693612,17693782-17694125,17695210-17695524 27 7.7
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 27 7.7
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 27 7.7
03_05_0244 - 22295105-22295389 27 7.7
01_06_1518 + 37925609-37925871,37925954-37926554 27 7.7
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 391 ESAEKQSQTIQYNVSRSTF*EDGQVIVSLEELLFSTNIFG 272
E A K + + Y+V R+ DGQ +V+LE +FS N G
Sbjct: 661 EDALKNGEVLAYHVYRTCLRMDGQTLVNLE--IFSNNFDG 698
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 248 TNTPYPPVPENIRRKQELFQRDNDLPVFLKG 340
T+TP+PP+ +RR+ + R+ +LP + KG
Sbjct: 363 TSTPHPPLLHPLRRRSDSAFRECELPRYGKG 393
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 140 ALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQ 307
++QRV + S ++ A+P R P+PP PE ++ Q L+Q
Sbjct: 437 SMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAAPYPFPPSPETLKVYQILYQ 492
>12_02_0445 - 19153580-19154269
Length = 229
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 203 EEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPVFLKGGPA 349
+E PG MP + P+PP P +L +R+ P + GPA
Sbjct: 12 DEELPRPGLPPTMPDDDPPFPPCPARSPAAPKLSRRERGAP---RDGPA 57
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 435 GIAWE*MVCTTPTNPRAQRSKVRRYSIT-SAGPPFRKTGKSLSLW 304
GI+W +VCTT T R Q +++ AGP T ++ W
Sbjct: 114 GISWRAVVCTTTTTSRGQDDDAAGRALSLPAGPYVVLTKRARGSW 158
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 185 QFSTVTEEACAAPGKRNLMPGTNTPYPPVPENI 283
QFS +++ P N MPGT P P P +I
Sbjct: 439 QFSEISQAKSHVPPADNDMPGTLVPRSPDPNSI 471
>02_02_0489 + 10869482-10871218
Length = 578
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 393 PRAQRSKVRRYSITSAGPPFRKTGKSLSLWKSSCFLRI 280
P KV +Y++ P K+GK+LS W + ++I
Sbjct: 174 PAPSTGKVSKYNLAPEPSPSSKSGKALSRWTTDDEVKI 211
>11_04_0432 + 17693438-17693612,17693782-17694125,17695210-17695524
Length = 277
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 55 NVSSTRPNYW*THCSFKSTGST-IPCSTHSPTTGGGSCNP 171
N SS + W F+ G+T IPC P TG GS P
Sbjct: 125 NSSSAKRTEWVMQ-EFRLAGATLIPCPVTRPATGDGSMLP 163
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 161 PVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPV 328
PV ++ TEEA +P MPG+ PP+P++ + ++ + D+P+
Sbjct: 285 PVEDLKSSGMKLATEEA-PSPSSNAAMPGSEPSAPPLPKS--AEDDMSIDEVDIPI 337
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 236 LMPGTNTPYPPVPENIRRKQ 295
L+PG TP+PP P+ R ++
Sbjct: 27 LLPGNRTPHPPPPQGSRPRK 46
>03_05_0244 - 22295105-22295389
Length = 94
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 106 STGSTIPCSTHSPTTGGGSCNPVQYQPVL 192
S+ ST+P S SP GGG C+ +L
Sbjct: 8 SSSSTLPSSPLSPGGGGGGCSVAYSSAIL 36
>01_06_1518 + 37925609-37925871,37925954-37926554
Length = 287
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 76 NYW*THCSFKSTGSTIPCSTHSPTTGGGS 162
NYW TH K I TH P + G S
Sbjct: 106 NYWNTHIKRKLLSRGIDPQTHRPVSAGSS 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,248
Number of Sequences: 37544
Number of extensions: 340037
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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