Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A24
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39) 31 0.64
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 28 4.5
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 28 6.0
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 27 7.9
SB_8590| Best HMM Match : STAS (HMM E-Value=0.53) 27 7.9
>SB_50705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 389 ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYE--YFRELVDKECSSQASDSFFQVR 216
E + + S DTV RQQ H + + C R +VF + + + + +CS F Q R
Sbjct: 81 ETQCSDSRDTVFRQQRHSVHTAETQCSDSRDIVFRQQRHSVQTAETQCSDSRDTVFIQQR 140
Query: 215 HKLLRSQSR 189
H + ++++
Sbjct: 141 HSVYTAETQ 149
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 371 SDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVRHKLLRS 198
S DTV RQQ H + + C R +VF + + + +CS F Q RH + +
Sbjct: 153 SRDTVFRQQRHSVQTAETQCSDSRDIVFRQQRHSVHTAETQCSYSRDTVFRQQRHSVQTA 212
Query: 197 QSR 189
+++
Sbjct: 213 ETQ 215
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 389 ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVR 216
E + + S DTV RQQ H + + C R VF + + + +CS F Q R
Sbjct: 59 ETQCSDSRDTVFRQQRHSVQTAETQCSDSRDTVFRQQRHSVHTAETQCSDSRDIVFRQQR 118
Query: 215 HKLLRSQSR 189
H + ++++
Sbjct: 119 HSVQTAETQ 127
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 371 SDDTV*RQQVHLLGRRASHCLSGRALVFYEYFREL--VDKECSSQASDSFFQVRHKL 207
S DTV RQQ H + + C R VF + + + +CS F Q RH +
Sbjct: 197 SRDTVFRQQRHSVQTAETQCSDSRDTVFRQQRHSVHTAETQCSYSRDTVFIQQRHSV 253
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 389 ERREAKSDDTV*RQQVHLLGRRASHCLSGRALVFYE--YFRELVDKECSSQASDSFFQVR 216
E + + S DTV QQ H + + CL R VF + + + + +CS F Q R
Sbjct: 125 ETQCSDSRDTVFIQQRHSVYTAETQCLYSRDTVFRQQRHSVQTAETQCSDSRDIVFRQQR 184
Query: 215 HKLLRSQSRTGW 180
H + ++++ +
Sbjct: 185 HSVHTAETQCSY 196
>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
Length = 402
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 353 RQQVHLLGRRASHCLSGRALVFYEYFRELVDKECSSQASDSFFQVRHKLLRSQS 192
R+Q L+ RAS L GR++ YE L ++CS +A D F +L S +
Sbjct: 102 REQKRLMVLRASVALHGRSVTLYEKAFPL-SEQCSKKAHDQFLADLASILPSNT 154
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 414 VCTTPTNPRAQRSKVRRYSITS-AGPPFRK 328
V T+ NPR + S VRR +++S A PP +K
Sbjct: 25 VITSRNNPRTRSSGVRRQNLSSLANPPHKK 54
>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 364 SSDFASLRSRIGRCSANHLLPCYSQKTIDH 453
SSD A L + + CSA++ +PC + T+D+
Sbjct: 574 SSDSAFLEALVPLCSASNNVPCDLRNTLDY 603
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 221 PGKRNLMPGTNTPYPPVPENIRR 289
PG ++ PG P PP+PE++R+
Sbjct: 362 PGPQDPGPGNILPRPPIPESLRQ 384
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +2
Query: 113 APLFPVAPIALQRVEVPVIQYNT-NQFSTVTE------EACAAPGKRNLMPGTNTPYPPV 271
AP VAP + E + NT ST+T E+ AAPG GTNTP +
Sbjct: 262 APEITVAPGTTKASERTITSGNTLGSKSTITPGTTESPESTAAPGTTVSREGTNTPDSLL 321
Query: 272 PE 277
PE
Sbjct: 322 PE 323
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 408 TTPTNPRAQRSKVRRYSITSAGPPFRKTGKSLSLWKSS 295
T P+ PRA R+YS TS GP K K L + SS
Sbjct: 399 TMPSEPRASPRMQRKYSPTS-GPSSYKQKKHLQVTLSS 435
>SB_8590| Best HMM Match : STAS (HMM E-Value=0.53)
Length = 158
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 262 IRSVRPRHQIPFSRCGTSFFGHSRELVGIVLDYRNLH 152
IRS RPR+QI GT + R+ G+ +++ ++
Sbjct: 64 IRSARPRYQILGQVPGTEIYRDIRQFPGLAKEFQRIN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,700,814
Number of Sequences: 59808
Number of extensions: 381108
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -