Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A24
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58760.1 68418.m07360 transducin family protein / WD-40 repea...    30   1.2  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    27   6.5  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    27   6.5  
At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transfera...    27   6.5  
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    27   6.5  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    27   8.6  
At3g54630.1 68416.m06044 expressed protein weak similarity to re...    27   8.6  

>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           damage-specific DNA binding protein 2 (GI:10798819)
           [Homo sapiens]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 91  HCSFKSTGSTIPCSTHSPTTGGGSCNPVQYQPVLDCDRRSLCRTW 225
           H +  STG  I          G  CNPVQ + +L C      R W
Sbjct: 296 HRTNNSTGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIW 340


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 367 SDFASLRSRIGRCSANHLLPCYSQKTIDH*CEA 465
           SDFA++  R+   + N LL CY + T+   C A
Sbjct: 39  SDFANVLHRLRMRNYNILLACYEETTLGVLCSA 71


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 367 SDFASLRSRIGRCSANHLLPCYSQKTIDH*CEA 465
           SDFA++  R+   + N LL CY + T+   C A
Sbjct: 164 SDFANVLHRLRMRNYNILLACYEETTLGVLCSA 196


>At3g55710.1 68416.m06189 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 464

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 101 SNLQAPLFPVAPIALQRVEVP 163
           S LQ PLFP+ P    R ++P
Sbjct: 226 SKLQVPLFPIGPFHKHRTDLP 246


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 204 SVTVENWLVLYWITGTSTRCRAMGATGNSGACRFEAAMSLP 82
           +V ++ W    W+   ST+C      G   +CRF    + P
Sbjct: 270 NVAIQEWKT--WLKVPSTKCDTYATCGQFASCRFNPGSTPP 308


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 176 NTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVP 274
           N   F  +T+E    P  R   P   TP PP P
Sbjct: 352 NRAAFQAITQEKSPVPPPRRSPPPLQTPPPPPP 384


>At3g54630.1 68416.m06044 expressed protein weak similarity to
           retinoblastoma-associated protein HEC [Homo sapiens]
           GI:2501873
          Length = 568

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 218 APGKRNLMPGTNTPYPPVPENIRRKQELF-QRDNDLPVFLKGGPADV 355
           A GKR    G     PP P +I +++ LF  RD+D   F    P+ +
Sbjct: 5   AAGKRRTTVGFGGAPPPPPPSIEQQRHLFNSRDSDAS-FASSRPSSI 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,133
Number of Sequences: 28952
Number of extensions: 264874
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)