Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A23
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...   171   8e-44
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    38   0.001
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    33   0.039
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    33   0.039
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.63 
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   3.3  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    26   5.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   7.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   7.7  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score =  171 bits (417), Expect = 8e-44
 Identities = 79/176 (44%), Positives = 124/176 (70%)
 Frame = +3

Query: 96  MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 275
           MV++A ++  + GKA++SRQF EM++ R+E LL++FP L++   Q+T VE+++VR+VYQP
Sbjct: 1   MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQP 60

Query: 276 LDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG 455
           LD+LY++LIT   SNIL+D++TL L S+VV   C  L E E+L  AF +  AFDE  +LG
Sbjct: 61  LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120

Query: 456 YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAKR 623
           YR++V+L Q+++++EM+SHEEKI + V + +              L+ ++ EAA+R
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARR 176


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
 Frame = +3

Query: 108 AATVCTKSGKALVSRQF-VEMTKARIEGLLAAFPKLMTG-GRQHTFVETESVRYVYQPLD 281
           A  V    GK ++SR +  ++  + +E  L    ++    G     +  E + Y+Y   +
Sbjct: 4   AIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHN 63

Query: 282 KLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYR 461
            +Y+L ++   S+ +E L  LR  + V  +Y  +L E  + +    +    DEI+  G+ 
Sbjct: 64  DVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFP 123

Query: 462 ESVNLAQVRSFVEMDSHEEK 521
           ++     ++ ++   S+  K
Sbjct: 124 QTTETKILQEYITQTSNTVK 143


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +3

Query: 228 QHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLN 407
           +H  V   S  Y+Y   + LY++ IT    N++  LE L    + +  Y  +L E  V +
Sbjct: 43  RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102

Query: 408 QAFNLLFAFDEIVALG 455
               +    DE++  G
Sbjct: 103 NVSFIFELLDEMIDYG 118


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
 Frame = +3

Query: 126 KSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQH---TFVETESVRYVYQPLDKLYML 296
           + GK  +S+ +V         L A   +L++   Q     F+E E+ + VY+    LY  
Sbjct: 10  RHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFC 69

Query: 297 LITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNL 476
                  N L  LE +  F  ++  +   + E +++   + +    DEI+  G     N 
Sbjct: 70  FCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNK 129

Query: 477 AQVRSFVE 500
             V   +E
Sbjct: 130 KSVLERIE 137


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = -3

Query: 102 VPSCFYILISNFHKKHLKYFRIGFHKFD 19
           +PS FYIL+++F++K ++YF+ GF K D
Sbjct: 496 LPS-FYILLNSFNQKLMEYFK-GFVKLD 521


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 592 CSVRDWRRPNVASRRAHRCPSAVAL 666
           C  ++WRRP   +  A +CPS +A+
Sbjct: 189 CGRQNWRRPVNFASHAKQCPSFLAM 213


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/87 (20%), Positives = 37/87 (42%)
 Frame = +3

Query: 237 FVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAF 416
           FVE +  + VY+    L+ +    +  N L  LE +  F   + +Y   + E +++    
Sbjct: 50  FVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFE 109

Query: 417 NLLFAFDEIVALGYRESVNLAQVRSFV 497
              +  +E++  G  +  +   V S V
Sbjct: 110 KAYYVMEELLLAGELQESSKTNVLSAV 136


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 385 SCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIYN 284
           SC      + L S+N + +SR LLA +V  +I N
Sbjct: 134 SCDSNENLSTLSSVNQNFNSRQLLATIVPESIQN 167


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 759 NDPLYEYLWPVSLESSRQ*IQMETTRTSSSYQSHCRRTSVSAAAGHVW 616
           +DPL + L P SLESS   I + +  +++ +    +R + S  + H +
Sbjct: 153 SDPLLDTLTPNSLESSFASISLNSFTSANEFIQFLKRLASSKLSIHTF 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,546
Number of Sequences: 5004
Number of extensions: 68486
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)