Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A22
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    29   0.46 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.46 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    27   2.5  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   10.0 

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 98  DYDTNEDLLYAYSPIPYFGMYHLVXIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSYNVN 277
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN 370


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 98  DYDTNEDLLYAYSPIPYFGMYHLVXIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSYNVN 277
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN 370


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 402 LPSARGRSLXGALQTSPGLSTRPKDSSLPTDILKILTTFKISSVSL 539
           L S+   S+  +  TSP L    KD+S  +DILK+    K ++ SL
Sbjct: 220 LNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKSATPSL 265


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 316 SLVVALTDERKLFVHIVAPREASYLVKVSHFSFSPVIDMVYQPSV 182
           SL+ +L +E +L V   A    +YL++   FS+S ++   +  SV
Sbjct: 510 SLLFSLDEENELQVSCAASGTLNYLIRHRLFSYSTLVQKGFSGSV 554


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 8   NTRNLNMLTS-----SSPSQVKTPSEAEWEAASXPDYDTNEDLLYAY 133
           NTRNL  L++     SSP   K  +   W     P Y+++++ +  Y
Sbjct: 257 NTRNLKSLSTAKGACSSPRLAKDGNHIAWLEMQTPQYESDQNQIMVY 303


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 186 LSIGXFTRWYIPK*GIGEYAYNR 118
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 2   RSNTRNLNMLTSSSPSQVKTPSEAEWEAASXPDYDTNEDLL 124
           RS++ N   L ++   ++K  S +E + +   DY+  +DL+
Sbjct: 359 RSHSMNPRELVAAKLKEIKENSFSENQQSDEADYNVTDDLI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,934
Number of Sequences: 5004
Number of extensions: 46511
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)