Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A22
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)                      28   6.0  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     28   6.0  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   6.0  
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = -1

Query: 334 PVGYLLSLVVALTDERKLFVHIVAPREASYLVKVSHFSFSPVIDMVYQPSVDRDXHEVVH 155
           P  ++ S+VVA+    K+ +  + P+  +  +K + +   PVID +     +     VV 
Sbjct: 98  PTNWVFSMVVAVKRNGKIRL-CIDPKPLNKALKRNRYPL-PVIDDLLAKLTNAKVFTVVD 155

Query: 154 TEVGYWGVRIQQ 119
            + G+W V++ +
Sbjct: 156 AKNGFWHVQLDE 167


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 130 VLPNTLLRYVPPREXPDRQRAGTPCRLL 213
           +LP  ++  V  R  P+R +A  PCRLL
Sbjct: 46  LLPLEIIPAVKQRALPERHKARAPCRLL 73


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 116 PHLCRSLXQRRLPILPLTVFLPVK 45
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   RSNTRNLNMLTSSSPSQVKTPSEAEWE 82
           R NTR++N  T S  S    P+++EW+
Sbjct: 391 RYNTRHVNSKTKSYDSDFVNPTDSEWK 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,000
Number of Sequences: 59808
Number of extensions: 375150
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)