Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A22
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.     30   6.5  
AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.     30   6.5  

>AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
 Frame = +3

Query: 255 SLGATM*TNSLRSSVRATTRESKYPTGSPSCLWXXXXXXXXXXXXASKLLPSARGRSLXG 434
           S+  T+ T+   SS+   +  S  P  S S               +++L  S    S   
Sbjct: 375 SMQTTLATHMDTSSMTPESESSIIPNASSST--GTGTVPTNTVFTSTRLPTSETWLSNNS 432

Query: 435 ALQTS-PGLSTRP----KDSSLPTDILKILTTFKISSVSLAKTAYTMEPGTNCPXT*XPR 599
            + T  PG+ST P      SSLPT IL+  +     S   A+T+ T    T  P T   R
Sbjct: 433 VIPTPLPGVSTIPLTMKPSSSLPT-ILRTSSKSTHPSPPTARTSETSVATTQTPTTLTTR 491

Query: 600 RHSXRXWSLPTQRXSTTT 653
           R +     + TQ   TTT
Sbjct: 492 RTTPITSWMTTQSTLTTT 509


>AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
 Frame = +3

Query: 255 SLGATM*TNSLRSSVRATTRESKYPTGSPSCLWXXXXXXXXXXXXASKLLPSARGRSLXG 434
           S+  T+ T+   SS+   +  S  P  S S               +++L  S    S   
Sbjct: 375 SMQTTLATHMDTSSMTPESESSIIPNASSST--GTGTVPTNTVFTSTRLPTSETWLSNNS 432

Query: 435 ALQTS-PGLSTRP----KDSSLPTDILKILTTFKISSVSLAKTAYTMEPGTNCPXT*XPR 599
            + T  PG+ST P      SSLPT IL+  +     S   A+T+ T    T  P T   R
Sbjct: 433 VIPTPLPGVSTIPLTMKPSSSLPT-ILRTSSKSTHPSPPTARTSETSVATTQTPTTLTTR 491

Query: 600 RHSXRXWSLPTQRXSTTT 653
           R +     + TQ   TTT
Sbjct: 492 RTTPITSWMTTQSTLTTT 509


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,715,803
Number of Sequences: 237096
Number of extensions: 1860860
Number of successful extensions: 5380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5380
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)