Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A22
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.50 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 226 FSFSPVIDMVYQPSVDRDXHEVVHTEV 146
           FSF     +VY+PS  R  HE+  T+V
Sbjct: 507 FSFHQWGILVYEPSACRPRHEIRSTDV 533


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 410 STGPITXRCAADVARIVNASEGLVVAYGYSENSD 511
           +T PIT RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 200 HVDYWGEG----KVTNLDKIRGFPRSYNVNEQFALVSKGHNE 313
           H+  W  G    K+ +LD  +     YN N ++ +V   H+E
Sbjct: 176 HIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 322 LLSLVVALTDERKLFVHIVAPREASYLVKVSHFSFSPVIDMVYQPSVD 179
           LLSLV A T   KL V IVA     + V     S+  ++  + + S D
Sbjct: 63  LLSLVCADTRLNKLAVFIVAGAVGVFSVLTILISYIYILMAILRMSAD 110


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 635 TSINNHLLQLGY 670
           T I NHL QLGY
Sbjct: 98  TCIENHLKQLGY 109


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 206 DYWGEGKVTNLDKIRGFPRSYNV 274
           D WG+     + K  G P S NV
Sbjct: 68  DQWGDKTFVIIMKFNGVPSSLNV 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,407
Number of Sequences: 438
Number of extensions: 3196
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)