Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A22
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19680.1 68414.m02453 expressed protein                             29   3.8  
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc...    28   5.0  
At2g23000.1 68415.m02743 serine carboxypeptidase S10 family prot...    27   8.7  

>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 133 LPNTLLRYVPPREXPDRQRAGTPCRLLGRRKSD 231
           LP+     +PPR  P R+  G+P + L R+ SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to SP|P87051
           Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
           (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
           Pfam profiles PF00160: peptidyl-prolyl cis-trans
           isomerase cyclophilin-type, PF00400: WD domain G-beta
           repeat
          Length = 631

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -1

Query: 307 VALTDERKLFVHIVAPREAS-YLVKVSHFSFSPVIDMVYQPSVDRDXHEVVHTEVGYWGV 131
           +A++D   LFVHI  PR  S   +       +P+  M Y P  D          + YW  
Sbjct: 173 LAVSDRDSLFVHIYDPRSGSNEPIASKEIHMNPIKVMKYNPVSDTMISGDTKGIIEYWSA 232

Query: 130 RIQQ 119
              Q
Sbjct: 233 TTLQ 236


>At2g23000.1 68415.m02743 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 437

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 203 VDYWGEGKVTNLDKIRGFPRSYNVNEQFALVSKGHNEGKQIPN 331
           VD W    +   D+I G+ R+Y+    FA V  G +  + +PN
Sbjct: 382 VDDWRPWMIN--DQIAGYTRTYSNKMTFATVKGGGHTAEYLPN 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,486
Number of Sequences: 28952
Number of extensions: 254676
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)