Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A21
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32793| Best HMM Match : KaiC (HMM E-Value=1.2)                      42   0.001
SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)                   31   1.3  
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              31   1.7  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      31   1.7  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     30   3.0  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   29   5.3  
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         29   5.3  
SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   7.0  
SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)                   29   7.0  
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.0  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   7.0  

>SB_32793| Best HMM Match : KaiC (HMM E-Value=1.2)
          Length = 203

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +3

Query: 699 SASFAVCLAGALIQLLK-LKSSSGNFDAYYDQSSQDFTDTEKE---IISEWAFNCXXIMH 866
           S + A+ L+   I L K +K +  +     D  S  + D E E   ++ +WAF    IMH
Sbjct: 130 SLAAAMLLSMQTIPLPKYVKKTPESETTAKDTDSYQYDDIETESLRLVCQWAFEAEKIMH 189

Query: 867 GTPSGIDNATCXF 905
           G PSGIDN+   +
Sbjct: 190 GQPSGIDNSIATY 202


>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 8   LQEELKTIHAFTQKTLTVDQWKTQ 79
           L+EE+KTIHAF+QKT T +QW  Q
Sbjct: 38  LEEEMKTIHAFSQKTYTPEQWAKQ 61


>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
          Length = 831

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 783 NMHRNSPKNSSISTAVSMLLLDRRQKTPNCQYPRQ 679
           N  R SP  S+ S ++  L  D  Q+ PN Q+PR+
Sbjct: 429 NTSRKSPSESNSSPSLDALNADSTQRIPNEQFPRK 463


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
 Frame = +1

Query: 352 TNQQSTYICRAWI----YRRPFHWSRQSKVCSILNWHQG*PANSLG-DYPTKSTMTITCE 516
           T   S++I   WI        F W+   K+ S  NW  G P    G D      +TI  +
Sbjct: 58  TQSLSSHISMFWIGLSRSNGAFRWTDGEKLGSFANWAIGSPVMDAGTDCVAMVNLTIVSK 117

Query: 517 GWRN 528
            WRN
Sbjct: 118 TWRN 121


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 766 PEELFNFNSCINAPARQTA-KDAELPVPAPMVSS-DPIEISIDFTGRYVLPKIPENTYRK 593
           P +  N N        QTA KDAE  V  P+  S D +  S DFT   +  +I  +  RK
Sbjct: 634 PSKEMNKNKNKGLKGDQTAAKDAEKEVDTPVYESQDMLTSSGDFTSAEIGVEIEPSKKRK 693

Query: 592 LRKE 581
           ++KE
Sbjct: 694 MKKE 697


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 777 AYYDQSSQDFTDTEKEIISEWAFNCXXIMH-GTPSGIDNATCXFGNLV 917
           +YYD+S    T+ +  + S WA N   ++H  T  G+++A C   N++
Sbjct: 626 SYYDESRSVMTEAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 672


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 750 LKSSSGNFDAYYDQSSQDFTDTEKEIISEWAFNCXXIMHGTPS 878
           LKS+ GNFDAY   S     + E    +    N   I HG PS
Sbjct: 18  LKSNRGNFDAYMTLSRSSTAELEWWEKNNVLDNKNVISHGAPS 60


>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = -1

Query: 346 VFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGA-----ETLTVNKLSTAVNIVLLM 182
           V T FIT+ELLR RL   A F  T   S     F G+     E   V    T +NI+L++
Sbjct: 79  VKTDFITIELLRGRLRYTANFGSTANISGFHEVFMGSHLADNEWHQVELRRTGLNILLIL 138


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 750 LKSSSGNFDAYYDQSSQDFTDTEKEIISEWAFNCXXIMHGTPS 878
           LKS+ GNFDAY   S     + E    +    N   I HG PS
Sbjct: 178 LKSNRGNFDAYMTLSRSSTAELEWWEKNNVLDNKNVISHGAPS 220


>SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1003

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 777 AYYDQSSQDFTDTEKEIISEWAFNCXXIMH-GTPSGIDNATCXFGNLV 917
           +YYD+S    T  +  + S WA N   ++H  T  G+++A C   N++
Sbjct: 753 SYYDESRSVMTKAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 799


>SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)
          Length = 341

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 632 STGKVYGYFDGI*AHHW--RGYWQFGVFCRLSSR 727
           S+ +VYG F  I   HW   G++  GVF R  SR
Sbjct: 285 SSSEVYGPFSSIDMLHWTNEGHFSDGVFVRKESR 318


>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
 Frame = +3

Query: 405 PLEPTVKSLFHPKLAPGITGKFSW-----RLPHKIDHDYHLRRVEEYLHLIKPNFD---S 560
           P E    S FH  +A G   K  W     +     DH +     ++Y +L   N+    +
Sbjct: 242 PTEYLKASSFHLLIANGSDIKCIWSFGDGKADKMFDHAHGGSFKQDYQYLNPGNYSVVVT 301

Query: 561 LPNNQKNSLRSFLYVFSGIFGSTYL---PVKSMDISMGSELTIGAGTGSSASFAVCLAGA 731
             N ++N  R+   +   +     +   PV+  + S   E TIG  TGS  ++   +A  
Sbjct: 302 CGNRKRNITRTTFAIVQEVISKLEIKPIPVQIYNQSFKIEWTIG--TGSQVTYTASIARK 359

Query: 732 LIQLLKLKSSSG 767
            ++++ +  SSG
Sbjct: 360 GLEVITIDVSSG 371


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 777  AYYDQSSQDFTDTEKEIISEWAFNCXXIMH-GTPSGIDNATCXFGNLV 917
            +YYD+S    T  +  + S WA N   ++H  T  G+++A C   N++
Sbjct: 1103 SYYDESRSVMTKAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 1149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,887,037
Number of Sequences: 59808
Number of extensions: 718766
Number of successful extensions: 2196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)