Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A21
(919 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to mev... 80 2e-15
At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to mev... 80 2e-15
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 34 0.11
At4g09450.1 68417.m01555 myb family transcription factor contain... 29 4.3
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 29 4.3
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f... 28 7.5
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f... 28 7.5
At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein ... 28 7.5
At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6 28 10.0
At1g54230.1 68414.m06183 hypothetical protein 28 10.0
>At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to
mevalonate kinase [Arabidopsis thaliana]
SWISS-PROT:P46086
Length = 378
Score = 79.8 bits (188), Expect = 2e-15
Identities = 66/231 (28%), Positives = 109/231 (47%)
Frame = +3
Query: 225 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETI 404
V APGK+IL GEH+VV+G TA+A ++ L + + ++ E + L D I
Sbjct: 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKD----I 58
Query: 405 PLEPTVKSLFHPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
LE + + P + P + L+ + + + N +
Sbjct: 59 SLEFSWSLARIKEAIPYDSSTLCRSTPASCSEET-LKSIAVLVE--EQNLPKEKMWLSSG 115
Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSSS 764
+ +FL++++ I G + P + + SEL G+G GSSA+ V L AL+ + +
Sbjct: 116 ISTFLWLYTRIIG--FNPAT---VVINSELPYGSGLGSSAALCVALTAALLASSISEKTR 170
Query: 765 GNFDAYYDQSSQDFTDTEKEIISEWAFNCXXIMHGTPSGIDNATCXFGNLV 917
GN SS D +T E++++WAF I+HG PSGIDN +GN++
Sbjct: 171 GN-----GWSSLD--ETNLELLNKWAFEGEKIIHGKPSGIDNTVSAYGNMI 214
>At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to
mevalonate kinase [Arabidopsis thaliana]
SWISS-PROT:P46086
Length = 378
Score = 79.8 bits (188), Expect = 2e-15
Identities = 66/231 (28%), Positives = 109/231 (47%)
Frame = +3
Query: 225 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETI 404
V APGK+IL GEH+VV+G TA+A ++ L + + ++ E + L D I
Sbjct: 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLRFPLPSAENNDRLTLQLKD----I 58
Query: 405 PLEPTVKSLFHPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
LE + + P + P + L+ + + + N +
Sbjct: 59 SLEFSWSLARIKEAIPYDSSTLCRSTPASCSEET-LKSIAVLVE--EQNLPKEKMWLSSG 115
Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSSS 764
+ +FL++++ I G + P + + SEL G+G GSSA+ V L AL+ + +
Sbjct: 116 ISTFLWLYTRIIG--FNPAT---VVINSELPYGSGLGSSAALCVALTAALLASSISEKTR 170
Query: 765 GNFDAYYDQSSQDFTDTEKEIISEWAFNCXXIMHGTPSGIDNATCXFGNLV 917
GN SS D +T E++++WAF I+HG PSGIDN +GN++
Sbjct: 171 GN-----GWSSLD--ETNLELLNKWAFEGEKIIHGKPSGIDNTVSAYGNMI 214
>At2g17440.1 68415.m02012 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeats
Length = 526
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 769 FPEELFNFNSCINAPARQTAKDAELPVPAPMVSSDPI 659
F E + + CI +P TA +PVPAP+VSSD I
Sbjct: 99 FDELIQRASFCIASPNSTTALPRSVPVPAPVVSSDEI 135
>At4g09450.1 68417.m01555 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 200
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 640 TGRYVLPKIPENTYRKLRKEFF*LLGNESKLGL 542
+G+YVLPK PE+ Y KL E GN K G+
Sbjct: 60 SGKYVLPKYPEDDYVKL-TEAGESKGNGKKTGI 91
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 29.1 bits (62), Expect = 4.3
Identities = 29/108 (26%), Positives = 46/108 (42%)
Frame = +3
Query: 435 HPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNSLRSFLYVFSG 614
H + G+ SW ++ D + EE +HLI D K + S L V +G
Sbjct: 1283 HKRKISNQKGRNSWLNLDEVAVDSFGKMCEEIVHLINATDDESGVPVKRAAISTLEVLAG 1342
Query: 615 IFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKS 758
F S + P+ ++ +E G S+S + GALI +L K+
Sbjct: 1343 RFPSGH-PIFRKCLAAVAECISSKNLGVSSS-CLRTTGALINVLGPKA 1388
>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 456 ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 581
+T + R P +D+ Y + E ++H+ + N +PN +K+
Sbjct: 232 VTIGYKTRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKD 273
>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 456 ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 581
+T + R P +D+ Y + E ++H+ + N +PN +K+
Sbjct: 232 VTIGYKTRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKD 273
>At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 105
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 271 ECSPCKMTFPGAETLTVNKLSTAVNIV 191
EC CK+T PG +T+ ++ S NI+
Sbjct: 48 ECPHCKITAPGLKTMQIHHESKHPNII 74
>At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
Length = 285
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 305 PRPKELHSDKGSKHSTRTSSPHTFA 379
P+P LH K + HS S P TF+
Sbjct: 16 PKPLSLHQTKPTSHSLSLSKPTTFS 40
>At1g54230.1 68414.m06183 hypothetical protein
Length = 266
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 670 SDPIEISIDFTGRYVLPKIPENTYRKLRKEFF*LLGNESKLGLIKCRY 527
S P+ ISI F RYV IP+N+ +LR E L+ E K+ + RY
Sbjct: 51 SFPLPISIRFQDRYV---IPDNSRERLRGEVEKLVA-ERKIEKVGNRY 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,711
Number of Sequences: 28952
Number of extensions: 495822
Number of successful extensions: 1317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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