Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A20
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    29   0.83 
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    29   1.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   1.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    28   1.9  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    27   4.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   7.8  

>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 518 CDNLLTVIVNLKNGSSMLMLSKAM*QTSMHLPNLRIFLNELNAFSKFFILSMEYL 354
           CDNL TV + LKNG+  ++ S  + Q    + N  IF   L A S  F    EY+
Sbjct: 30  CDNLSTVGLCLKNGTGEVLFSGLIKQ----MANFYIFPLLLEARSDHFYEGNEYI 80


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 712 LLNLSVHKFDLMSTLKHIHVLLLCHRDI 795
           +L + ++ + L+ +L +IH   +CHRDI
Sbjct: 131 MLEVKLYIYQLLRSLAYIHASGICHRDI 158


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = -1

Query: 566 PLLANHTMWSAYKNKLCDNLLTVIVNLKNGSSMLMLSKAM*QTSMHLPNLRIFLNELNAF 387
           PL AN TM +   N LCDNLLT ++        ++L+ AM       P  +  L+ ++  
Sbjct: 118 PLSAN-TM-AKMANGLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRI 175

Query: 386 SK--FFILSMEYLLA 348
            K   FI+ +E +LA
Sbjct: 176 YKNSEFIMPIEKVLA 190


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 715 LNLSVHKFDLMSTLKHIHVLLLCHRDI 795
           L++ ++ F L   L ++H   +CHRDI
Sbjct: 125 LSIKLYAFQLFRALAYLHSTGVCHRDI 151


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 553 LAKSGFLKTDSDTWNQTANKFWLLSII 633
           +AKS  +K+ SD WN+  +  WL++ I
Sbjct: 206 MAKSS-MKSQSDIWNEYTSGNWLMAFI 231


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 619 LLSIIANLARDLYEILHLL--QLHNSKFLRPSDLLNLSVHKFDLMSTLKHIHVLLLCHRD 792
           L  I  +   D+Y +  LL   LH     RP +   +    + ++  LK +H   + HRD
Sbjct: 82  LSDIFISPFEDIYFVTELLGTDLHRLLTSRPLETQFIQYFLYQILRGLKFVHSAGVIHRD 141

Query: 793 IFVDT--LXNACDLFI 834
           +      +   CDL I
Sbjct: 142 LKPSNILINENCDLKI 157


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +1

Query: 346  NANKYSIDRIKNLENAFSSFRKILRLGRCIDVCYIALDSMSIEDPFLRLTITVSKLSHSL 525
            +  K+ +DR+K+L +   +    L     I +    LDS SI D        +S++    
Sbjct: 970  SGKKFPLDRMKSLNH---NVDVQLTSKSLISLAEKRLDSFSIND-------ILSQVPVFE 1019

Query: 526  FLYADHIVWLAKSGFLKTDSDTWNQ 600
            F++     W A  G L+ +++ WN+
Sbjct: 1020 FIFLSRNFWTASLGNLQQEANFWNR 1044


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,925
Number of Sequences: 5004
Number of extensions: 66620
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)