Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A20
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25985| Best HMM Match : PEX11 (HMM E-Value=0.013)                   50   2e-06
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.031
SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)                 33   0.39 

>SB_25985| Best HMM Match : PEX11 (HMM E-Value=0.013)
          Length = 266

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 475 DPFLRLTITVSKLSHSLFLYADHIVWLAKSGFLKTDSDTWNQTANKFWLLSIIANLARDL 654
           D  LR  I   ++++ L+   DH+ W A+ G  K+D   W++   +FW L +   + R+L
Sbjct: 14  DSVLRTLIMCRRMTYILYYLIDHVTWAARLGLFKSDPKAWSRFQARFWALVLCFGILRNL 73

Query: 655 YEILHLL 675
           +++  L+
Sbjct: 74  HDLKTLI 80


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 628 IIANLARDLY-EILHLLQLHNSKFLRPSDLLNLSVHKFDLMSTLKHIHVLLLCHRDI 795
           I  NL  D   E ++ +  H SK  +   +L + ++ + L  +L +IH L +CHRDI
Sbjct: 132 IYLNLVLDFIPETVYRVARHYSKAKQTIPMLYIKLYMYQLFRSLTYIHCLGICHRDI 188


>SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)
          Length = 239

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
 Frame = +1

Query: 256 KVNNQSIGRDKLARFIQYISKLVWHQL-ETRNANKYSIDRIKNLENAFSSFRKILRLGRC 432
           K+     GRDK+ R + Y   L    L E    +K S   +       +  R +LRL   
Sbjct: 9   KIMESYRGRDKVIRLLCYSGMLSGGLLSEVYKEDKLSRSLLI-FAGRLAECRTMLRLFDD 67

Query: 433 IDVCY-IALDSMSIEDPF-LRLTITVSKLSHSLFLYADHIVWLAKSGFLKTDSDTWNQTA 606
           + + + +    + ++D   LR+T  +S  +  +F   +HI W   +  +  DS      +
Sbjct: 68  LSMFFHVKKYGLGLKDDLMLRVTKILSNTAIQIFYPVEHIAWARDNKIIHGDSARLYALS 127

Query: 607 NKFWLLSIIANLARDLYEIL 666
              WL+S+  +  + ++ +L
Sbjct: 128 VYCWLVSLCLDALQSVWSLL 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,758,835
Number of Sequences: 59808
Number of extensions: 460158
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)