Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A20
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    33   0.34 
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      33   0.34 
AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical ...    31   0.78 
AC090999-26|ABA00172.1|  398|Caenorhabditis elegans Hypothetical...    31   1.4  
Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein...    29   5.5  
U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.        29   5.5  
U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinas...    29   5.5  
L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promot...    29   5.5  
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 658 EILHLLQLHNSKFLRPSDLLNLSVHKFDLMSTLKHIHVLLLCHRDI 795
           E ++ +  H SK  +   ++ + ++ + L+ +L +IH + +CHRDI
Sbjct: 117 ETVYRVARHYSKQRQQIPMIYVKLYMYQLLRSLAYIHSIGICHRDI 162


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 658 EILHLLQLHNSKFLRPSDLLNLSVHKFDLMSTLKHIHVLLLCHRDI 795
           E ++ +  H SK  +   ++ + ++ + L+ +L +IH + +CHRDI
Sbjct: 117 ETVYRVARHYSKQRQQIPMIYVKLYMYQLLRSLAYIHSIGICHRDI 162


>AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical
           protein W04B5.5 protein.
          Length = 320

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 739 DLMSTLKHIHVLLLCHRDIFVDTLXNACDLFIPLT 843
           +L+S L+HIH L + HRD+  D L    D  I LT
Sbjct: 143 NLLSALEHIHKLGIIHRDVKADNLLVKSDGRIMLT 177


>AC090999-26|ABA00172.1|  398|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.19 protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 295 RFIQYISKLVWHQLETRNANKYSIDRIKNLENAFSSFRK 411
           RFI  ++ LV    +  N  KY+++ IK    A +S +K
Sbjct: 261 RFINVVNNLVTTPEDAENVKKYNVESIKKRRKAMNSIKK 299


>Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical
           protein F43C1.2a protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 646 RDLYEILHLLQLHNSKFLRPSDLLNLSVHKF--DLMSTLKHIHVLLLCHRDIFVDT--LX 813
           +D+Y +  L++    K L+   L N  V  F   ++  LK+IH   + HRD+      L 
Sbjct: 102 KDIYIVQCLMETDLYKLLKTQKLSNDHVCYFLYQILRGLKYIHSANVLHRDLKPSNLLLN 161

Query: 814 NACDLFI 834
             CDL I
Sbjct: 162 TTCDLKI 168


>Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical
           protein F43C1.2b protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 646 RDLYEILHLLQLHNSKFLRPSDLLNLSVHKF--DLMSTLKHIHVLLLCHRDIFVDT--LX 813
           +D+Y +  L++    K L+   L N  V  F   ++  LK+IH   + HRD+      L 
Sbjct: 170 KDIYIVQCLMETDLYKLLKTQKLSNDHVCYFLYQILRGLKYIHSANVLHRDLKPSNLLLN 229

Query: 814 NACDLFI 834
             CDL I
Sbjct: 230 TTCDLKI 236


>U51995-4|AAA96072.2|  317|Caenorhabditis elegans F-box a protein
           protein 53 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 32/114 (28%), Positives = 47/114 (41%)
 Frame = +1

Query: 67  IXLKSCKRNSVLQFSKNAPH*HTRKLLQVLSTLLA*RLYFICVSLDFTLLHKVHDEIAMD 246
           I LK+ +RN VL    N P      +L+ L  +       +C SL  T + K       D
Sbjct: 4   IGLKTPQRNLVLPTFLNMPLNVANLVLEKLEPVDRLSARKVCRSLK-TAVEKFGLRFD-D 61

Query: 247 IIIKVNNQSIGRDKLARFIQYISKLVWHQLETRNANKYSIDRIKNLENAFSSFR 408
           I + +  QS+  D     I Y +     ++  RN  K  IDR   +E A   F+
Sbjct: 62  IDLILREQSVDIDLNGTAIIYTNAANARRIVCRNGEKKIIDRENFVERALKDFK 115


>U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 646 RDLYEILHLLQLHNSKFLRPSDLLNLSVHKF--DLMSTLKHIHVLLLCHRDIFVDT--LX 813
           +D+Y +  L++    K L+   L N  V  F   ++  LK+IH   + HRD+      L 
Sbjct: 102 KDIYIVQCLMETDLYKLLKTQKLSNDHVCYFLYQILRGLKYIHSANVLHRDLKPSNLLLN 161

Query: 814 NACDLFI 834
             CDL I
Sbjct: 162 TTCDLKI 168


>U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinase
           protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 646 RDLYEILHLLQLHNSKFLRPSDLLNLSVHKF--DLMSTLKHIHVLLLCHRDIFVDT--LX 813
           +D+Y +  L++    K L+   L N  V  F   ++  LK+IH   + HRD+      L 
Sbjct: 170 KDIYIVQCLMETDLYKLLKTQKLSNDHVCYFLYQILRGLKYIHSANVLHRDLKPSNLLLN 229

Query: 814 NACDLFI 834
             CDL I
Sbjct: 230 TTCDLKI 236


>L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promoting
           complex; seealso mat protein 2 protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +1

Query: 415 LRLGRCIDVCYIALDSMSIEDPFLRLTITVSKLSHSLFLYADHIVWLAKSGFLKTD---- 582
           + + R I   Y  L  + +E         V K+  S+ +    + WL K GF+  +    
Sbjct: 553 VEVDRTIPNMYALLLFLFLEKETWTTAEVVEKMGMSVVVTRKRLEWLVKQGFICMNPIIS 612

Query: 583 SDTWNQTAN 609
           SDTW  T N
Sbjct: 613 SDTWTLTRN 621


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 623 SNQNLFAV*FQVSESVFRNPLLANHTMWSAYKNKLCDNLLTVIVNLKNGSSMLM---LSK 453
           S Q +FA    ++E++   PL + H      +   CD  LT + + K   S+L+   +  
Sbjct: 138 SGQPMFAPAIAITETLDSGPLKSIHLSTDKEEEMDCDG-LTKLPHWKRIKSLLIEGFIVS 196

Query: 452 AM*QTSMHLPNLRIFLNELNAFS 384
           A  +  +HLP + I +  +  F+
Sbjct: 197 APLEHFLHLPEVTITMQSITIFN 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,601
Number of Sequences: 27780
Number of extensions: 364160
Number of successful extensions: 976
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)