Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A20
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.29 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   2.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 581 SVFRNPLLANHTMWSAYKNKLCDNLLTV 498
           S+  NPL+A +  WS    K CD L +V
Sbjct: 96  SIDGNPLIAPYPNWSYNDVKYCDGLTSV 123


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 417 EVGQMHRRLLHCFRQHEHRRSIFKINN 497
           ++GQ++RRL+H   + E +R +F  N+
Sbjct: 237 DLGQVYRRLVHAVNEIE-KRLLFSHND 262


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 566 PLLANHTMWSAYKNKLCDNLLTV 498
           PLL  +  WS  KN+ C  + +V
Sbjct: 103 PLLEPYPNWSWAKNQNCSGITSV 125


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 385 ENAFSSFRKILRLGRCIDVCYIALDSMS 468
           E+  + F ++ R  R  D C + LDSM+
Sbjct: 336 ESLDTQFLQVCRSRRHSDSCCLCLDSMN 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,212
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)