Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A16
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0164 + 15265878-15268701,15268782-15269200 30 2.9
01_06_0258 + 27950196-27950749,27953670-27954570 29 3.8
09_02_0001 - 2857651-2857923,2858089-2858283 29 5.1
06_03_0188 - 17691582-17692241 29 5.1
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 29 5.1
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 29 6.7
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 6.7
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 29 6.7
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 29 6.7
01_06_1740 - 39575614-39576981 28 8.8
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 414 WFKNDSPVYEYDVESNELIDSSPTSI 491
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 709 CSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 888
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 697 ATGWCSRAASRDTPSPRSPGSTDRMCP 777
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 679 PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 783
P WTT+ T A+ R+T P P + + PL+
Sbjct: 35 PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +3
Query: 72 SPSXRSELRIDFAXKXFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLS 251
SPS + + DF +L E+ +Y + R L + TV + + KLL
Sbjct: 22 SPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPNHVAIKIALELKKLL- 80
Query: 252 DIDNSIENGVQAKSDGS---HKYLSITQGPLPS 341
+DNS+ + ++ + G ++Y +T PL S
Sbjct: 81 -VDNSLLDLMEKRGYGEDYINRYKMMTSAPLTS 112
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 703 GWCSRAASRD-----TPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 867
GW R S+ TPS S ++ CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 868 KPKTLSARRRXK 903
LS++ + K
Sbjct: 91 SAHLLSSQLKEK 102
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 390 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 539
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 28.7 bits (61), Expect = 6.7
Identities = 28/91 (30%), Positives = 42/91 (46%)
Frame = +1
Query: 613 LLSSRNALSCSR*SLASWSPIAPTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTR 792
+L +R L+ + LA +SP + SA+ CS AAS + S S RM T
Sbjct: 1 MLFARRPLATAASHLAPFSPPLLLFFASASSSCSSAASPSSASGPRGCSAVRM----ETG 56
Query: 793 A*RCFARASWSYPPSSGATWTSTLAKPKTLS 885
A P S+GA W++ +P+T+S
Sbjct: 57 AVE---------PASTGAIWSTPSVEPRTIS 78
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 315 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 443
S +GP P+ HT T ++T A S P W K+ +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 774 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 887
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,411,660
Number of Sequences: 37544
Number of extensions: 516535
Number of successful extensions: 1628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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