Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A16
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38560.1 68418.m04662 protein kinase family protein contains ... 31 0.79
At2g21630.1 68415.m02573 transport protein, putative similar to ... 31 1.4
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 30 1.8
At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl... 29 4.2
At3g53930.1 68416.m05958 protein kinase family protein contains ... 28 7.4
At3g51630.1 68416.m05662 protein kinase family protein contains ... 28 9.7
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 28 9.7
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 28 9.7
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 31.5 bits (68), Expect = 0.79
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 658 ASWSPIAPTWTTSATGWCSRAASRDTPSPR----SPGSTDRMCPLKRTRA*RCFARASWS 825
AS SP APT TT+ S + +TPSP SP P T A+ +
Sbjct: 121 ASPSPPAPT-TTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPPPPATSA 179
Query: 826 YPPSSGATWTSTLAKPKT 879
PPSS T STLA P T
Sbjct: 180 SPPSSNPTDPSTLAPPPT 197
>At2g21630.1 68415.m02573 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 761
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 309 YLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDS 431
Y S+ LP TT+E C++ SP+P V F D+
Sbjct: 95 YSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDT 135
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 729 GHPKPKITWFNGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFGSE 893
GH P++T + + PIE+N + + S S+L D+DE + +EN FG +
Sbjct: 672 GHTSPEVTCSDPRTQPIERNESCESVFSS---ARSVLSDDVDELS-NSENDFGDD 722
>At3g23920.1 68416.m03005 beta-amylase, putative /
1,4-alpha-D-glucan maltohydrolase, putative similar to
beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
Pfam profile PF01373: Glycosyl hydrolase family 14
Length = 575
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 597 YNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 716
YN EL E AK LK + V+S+ N+G+ V +P
Sbjct: 161 YNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIP 200
>At3g53930.1 68416.m05958 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 711
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 342 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVT 521
Y G +++ ++GSP P + FK+ SP E+ ++ N ++P IA + + +
Sbjct: 421 YVLISGPPVDIPSSSSGSPKPFNYPFKSHSPPVEF-IKRNVTNLTAPMPIASATGNNL-S 478
Query: 522 RTTSQDVYTCL 554
R S + C+
Sbjct: 479 RFGSLESQNCI 489
>At3g51630.1 68416.m05662 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 549
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 788 VLFNGHILSVEPGDLGLGVSLDAAREHHPV 699
+ NGH+ V+ GDLGL L ++ H V
Sbjct: 159 IFVNGHLGQVKIGDLGLAAILRGSQNAHSV 188
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 606 DSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKI--TWFNGQNVPI 779
D+ TE + +P++ +Y+ D ++++ C V+ K K + G +
Sbjct: 2249 DADTEQDPEESVSDQRPKVGSAYTQMEDTDEAKLLMGCSVESEEKEKTLQSHIPGDDADT 2308
Query: 780 EKNPRMKVLRSG 815
EKNP V G
Sbjct: 2309 EKNPEESVSVQG 2320
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 606 DSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKI--TWFNGQNVPI 779
D+ TE + +P++ +Y+ D ++++ C V+ K K + G +
Sbjct: 2249 DADTEQDPEESVSDQRPKVGSAYTQMEDTDEAKLLMGCSVESEEKEKTLQSHIPGDDADT 2308
Query: 780 EKNPRMKVLRSG 815
EKNP V G
Sbjct: 2309 EKNPEESVSVQG 2320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,474,052
Number of Sequences: 28952
Number of extensions: 375336
Number of successful extensions: 1062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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