Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A15
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   1.0  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   3.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   5.6  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   7.4  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    25   9.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 81   TDDFLKLINNNTINTYCFTKLNVDFISTKRSLNVYIKKLR 200
            T+  L L  +N +  YC      DFI     L  YI KLR
Sbjct: 3234 TESNLSLFADNILPDYCKQLFKEDFIVNSNGLKSYIFKLR 3273


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 469 NNVSVLLQV-RRFIEYVPLPENTS*VGICVLSASFLT 362
           N+++  L+  + F+E V   ENTS +G  VLS  FLT
Sbjct: 757 NHIAQFLEFWKTFMEGVKEAENTSAIGKLVLSKLFLT 793


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 103 ISFKKSSVS*KNLPSIYCEMCFRPINN 23
           I+ K S+ S K LP  YC +  +P N+
Sbjct: 28  IAQKNSTTSYKQLPFNYCSLSLQPFNH 54


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  KLINNNTINTYCFTKLNVDFISTKRSLNVYIKKLRYFFP 212
           KL+ N+  ++   +K   DF++     NVYI    +F+P
Sbjct: 7   KLLENHQFSSISSSK---DFVAVSAETNVYILSKDFFYP 42


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 574 TNKQNVIQNNLW*SLRYFIHKTV 506
           T +QNV    LW  L+YF  K V
Sbjct: 60  TTRQNVATRRLWLGLKYFEGKPV 82


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 574 TNKQNVIQ----NNLW*SLRYFIHKTVSKPPNYLILNFIN 467
           TN+  V+     N +   + +FI K V  PP Y  L+ +N
Sbjct: 135 TNQHTVLDEATYNRILKRIDFFIEKVVEVPPTYHFLSLLN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,105
Number of Sequences: 5004
Number of extensions: 71626
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)