Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A15
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_56210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +2

Query: 554 YNVLFVCLLTKSPK-KRKCSFFSHRRFKS--LETVNLSNLFRESYDFINHLA*SKNNQ 718
           + VL   +L   P+ +R+C  F   +     + ++ ++ +FRE+ D +NH+A S N +
Sbjct: 36  FPVLLGLVLNNYPRWRRRCRLFHKMKLDDSVVRSLRVAKVFRENSDNVNHMAFSANGE 93


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 549  FCITFCLFVS*QNPQRNGNVVS 614
            FC+ +CLF+S +  QRN N +S
Sbjct: 1041 FCLVYCLFMSLRGTQRNSNELS 1062


>SB_56210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 724 FHPLFTKIIYKVVLLTYDTDVFYIELNXQKI 816
           F+P+F ++IY + ++ +  DV Y+  N  ++
Sbjct: 7   FYPMFYRVIYPIFIIGFLPDVLYLPDNRVRV 37


>SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 724 FHPLFTKIIYKVVLLTYDTDVFYIELNXQKI 816
           F+P+F ++IY + ++ +  DV Y+  N  ++
Sbjct: 64  FYPMFYRVIYPIFIIGFLPDVLYLPDNRVRV 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,281,280
Number of Sequences: 59808
Number of extensions: 474165
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)