Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A14
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 0.41
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 1.6
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 3.8
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 26 3.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 6.6
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 6.6
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 25 6.6
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 25 6.6
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 25 6.6
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 8.8
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 480 MASRRVRNRSRNKLAILSLMRLIRWYISRNFSHI 379
MASR +RN + L +L++ LI WYI F HI
Sbjct: 157 MASR-IRNIG-SALFVLTIFPLIYWYIQHKFKHI 188
>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 453 SRNKLAILSLMRLIRWYISRNFSHISAGSIMSSLSFRQRVV*SKSVTILRCSTKY 289
S + + SL ++IR ++ NF + G + SSL+ + + S ILR S ++
Sbjct: 29 SDSSITTSSLSKIIRTMVAENFGDVGIGKVASSLTVKY-FSPNTSTGILRVSRQH 82
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 466 CTKSIAKQVSNIVVNAIDSLVYF*KFFTYFSRKYYVFLEFSP 341
CT+ V + N++D + F Y R Y+++L+ SP
Sbjct: 209 CTEKAVAMVYTVEQNSLDDHLVDKVLFDYLVRTYHLYLDESP 250
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 168 NEFIETCQFISFREXLTHIHNEVLSQMNDSFLQN 67
N F ET + + L H+ V S + DS LQN
Sbjct: 144 NRFTETLVYDIYTLCLVSWHHHVFSHIRDSLLQN 177
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 382 YFSRKYYVFLEFSPASCMIQICYYIKMFN*IFQTYLK*GIW 260
+ R +FL FSP CM+ I + + +F T G+W
Sbjct: 721 FLDRLAILFLTFSPTMCMLSISFEALFYVVLFITL---GLW 758
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 347 KLKEDIILPAEICEKFLEIYQRINRINDNIANLF 448
++ E+ + + FL Q +NR ND I NLF
Sbjct: 342 RVSEEKLANVRTTQAFLGERQEVNRYNDYIRNLF 375
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 446 FRDRFRTRLDAIKLRNSRITDEGFRFL 526
F D FR ++ + +NSR+ RFL
Sbjct: 478 FSDNFRPYVELLPYKNSRMVTHSIRFL 504
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +2
Query: 272 LEICLEYLVEHLNIVTDLDHTTRWRKLKEDIILPAEICEKFLEI--YQRINRINDNIANL 445
L CL+ L E L + L+H T +++ EI +K LE Q + ++++ L
Sbjct: 288 LNACLKVLEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKL 347
Query: 446 FRDRF--RTRLDAIKLRNSRITDEGFRFLMEHKPQEVE 553
++ +L+A K R I +E ++ + + + ++++
Sbjct: 348 EHEQHSRNQKLEAAKQRMDNIREE-YKVITQERNKKIQ 384
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 188 IVSRFKDRMAHKVVAEITSLYDTSPDSLLEICLEYLVEHLNIVT 319
++S+ + K + E S +D + S + C+E ++ NIV+
Sbjct: 37 LISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVS 80
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 77 NESFICERTSLCMWVXISRNDIN 145
N + R SLC W+ + ND+N
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVN 160
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 519 DSLWSTNRRKLNSYNA-NISLQCHW 590
D LWS NR+ LN+ I+L +W
Sbjct: 302 DRLWSKNRQPLNNSECFGINLDANW 326
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 236 ITSLYDTSPDSLLEICLEYLVEHL 307
+ S+ D S + +LE CLE + HL
Sbjct: 485 LDSVLDLSKEQILEYCLETVSSHL 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,126
Number of Sequences: 5004
Number of extensions: 50759
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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