Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A14
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137...    30   1.3  
12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000     29   2.2  
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300...    29   2.2  
09_02_0548 - 10467342-10468810,10470309-10471632                       29   2.2  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    29   3.0  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    28   5.2  
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    28   6.8  

>04_04_1667 +
           35211776-35212132,35212640-35212727,35213573-35213705,
           35213806-35214616
          Length = 462

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +2

Query: 335 TRWRKLKEDIILPAEICEKF-LEIYQRINRINDNIANLF--RDRFRTRLDAIKLRNSRIT 505
           T WR + +DI+   E C K    +  +     D +   F  RD+ +         +S + 
Sbjct: 92  TTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVL 151

Query: 506 DEGFRFLMEHKPQEVELIQCEYLSPMSLETINRNS 610
           DE  +FL+  K +       +Y+  M  + I+R+S
Sbjct: 152 DETGKFLLSAK-RSRRTTHTDYIISMDSKNISRSS 185


>12_02_0162 - 14677634-14678003,14679359-14679420,14680785-14681000
          Length = 215

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 207 TGWRTKWWRRLLRCTIP-HQIPYLRYVWNI*LN 302
           T  R  WWR  L C  P + I   +YVW I L+
Sbjct: 56  TSTRRSWWREGLACEAPINDISKGKYVWKIKLD 88


>10_06_0127 -
           11027692-11027826,11027925-11027993,11029925-11030011,
           11030146-11030286
          Length = 143

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -2

Query: 579 GERYSHCMSSTSCGLCSIRNRNPSSVMRELRSFMASRRVRNRSRNKLAILSLMRLIRWYI 400
           GE    C++ T      + +RN   V R   S      V N   N+LAIL  + L+   +
Sbjct: 34  GEIVRKCLARTDHQCSFVEHRNYKVVYRRYASLFFLVGVDN-DENELAILEFIHLLVETM 92

Query: 399 SRNFSHISAGSIMSSL 352
            R+F ++    IM  L
Sbjct: 93  DRHFGNVCELDIMFHL 108


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 239 TSLYDTSPDSLLEICLEYLVEHLNIVTDLDHTTRWRKL 352
           T+L+D  PD LLE+ L+ L   L++V       RWR++
Sbjct: 40  TTLHDV-PDKLLELILQNLDSSLSLVRAAATCQRWRRV 76


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 188 IVSRFKDRMA--HKVVAEITSLYDTSPDSLLEICLEYLVEHLNIVTDLDHTTRWRKLKED 361
           ++S+ K  M+   ++V E+T    TS  +L   C E  V   N++ D+  T+      E 
Sbjct: 297 VISKLKKDMSALKQMVVELTRAKRTSSVNLSTSCSELPVMSSNVLYDMSSTSPSSSDSES 356

Query: 362 IILPAEICEKFLEI 403
            + P E  +  L++
Sbjct: 357 PVAPREYLDDHLKV 370


>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 338 RWRKLKEDIILPAEIC----EKFLEIYQRINRINDNIANLFRDRFRTRLDAIKLRNSRIT 505
           +W+  +ED +   EI     E  LEI  R  R+ D  A+L R  +R +L       S+I 
Sbjct: 123 KWKLSEEDGMERLEIAHIRMEAALEISSRWPRVTD--ASLLR--WRKKLKRTSDECSQIM 178

Query: 506 DEGFRFLMEHKPQEVELIQCEY 571
           D   R  ME    E E+ QC +
Sbjct: 179 DRCKRRAMEDDEMEQEVRQCAF 200


>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 225 WWRRLLRCTIPHQIPYLRYVWN 290
           WW+RLL+    H  PY++  WN
Sbjct: 88  WWKRLLKSEEKH--PYIKVDWN 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,844
Number of Sequences: 37544
Number of extensions: 284112
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)