Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A14
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)          29   4.0  
SB_13991| Best HMM Match : MutS_V (HMM E-Value=0)                      27   9.2  

>SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +2

Query: 362 IILPAEICEKFLEIYQRINRINDNIANLFRDRFRTRLDAIKLRNSRITDEGFRFLMEHKP 541
           + LP ++CE F+    +     DN  + F +   +R+  + L+ + ITD G + +     
Sbjct: 32  VFLPEDVCEAFISKRLKSGDCTDNFLSSFSNPQTSRIVRVNLKGASITDRGLQLISCQPI 91

Query: 542 QEVELIQC 565
           +E+ + +C
Sbjct: 92  RELNISRC 99


>SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)
          Length = 808

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 134 NDINWQVSINSFAAHNY*IVSRFKDRMAHKVVAEITSLYDTSPDSLLEICLEYLVEHL 307
           N ++W  S++    H   +V++++ R  ++ VAE  +  D  P+   E+  + L EHL
Sbjct: 715 NRVHWSESMDRLQCHWEKLVAKYEQRGNYEEVAEAKATNDLVPNYRKEL-RKVLFEHL 771


>SB_13991| Best HMM Match : MutS_V (HMM E-Value=0)
          Length = 530

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 141 ISFREXLTHIHNEVLSQMNDSFLQNKDTF*EXHGR 37
           I  R+      N  LSQ+ND F   KDT+ +  G+
Sbjct: 194 IETRKDGVRFTNSALSQLNDEFRGYKDTYNDVQGK 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,743
Number of Sequences: 59808
Number of extensions: 359998
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)