Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A14
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 37 0.013
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical pr... 30 1.5
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 29 2.0
U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine rece... 29 3.5
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80029-10|AAB37589.1| 460|Caenorhabditis elegans Hypothetical p... 28 4.6
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 27 8.1
U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein. 27 8.1
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 27 8.1
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 8.1
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = -2
Query: 561 CMSSTSCGLCSIRNRNPSSVMRELRSFMASRRVRNRSRNKLAILSLMRLIRWYISRNFSH 382
C ++ L S N +S+MR ++ + NRS N+L + L +LIR + +
Sbjct: 765 CAAAIRVMLESFVNTQKASIMRMMKKTFSRHLTENRSANELLLFILKQLIRQQMHYATAR 824
Query: 381 ISAGSIMSSLS 349
+AG+I+ S++
Sbjct: 825 AAAGTILQSVT 835
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +2
Query: 254 TSPDSLLEICLEYLVEHLNIVTDLDHTTRW-RKLKEDIILPAEICEKFLE-----IYQRI 415
T+ D+ L ++ I TDL+ T K E + P + EK E +YQ
Sbjct: 478 TTVDAALAAATNAEQKNKQIQTDLERATELLEKRMEGNVAPQQRAEKLRERAAKLLYQA- 536
Query: 416 NRINDNIANLFRDRFRTRLD 475
R ND+I NL +D RLD
Sbjct: 537 QRHNDDIDNLSKDSTEMRLD 556
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 266 SLLEICLEYLVEHLNIVT--DLDHTTRWRKLKEDIILPAEICEKFLEIYQRINRINDNIA 439
++L L Y+++ +++ + H R +K K ++ A I K ++ R+N+ D
Sbjct: 367 NILNFDLPYILDRAKVLSLPQVSHLGR-QKEKGSVVRDAAISSK--QMGSRVNKSIDIHG 423
Query: 440 NLFRDRFRTRLDAIKLRNSRITDEGFRFLMEHKPQEVE 553
+ D + L KLR+ + ++FL E K ++VE
Sbjct: 424 RIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQK-EDVE 460
>Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical
protein T11B7.1 protein.
Length = 445
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 299 EHLNIVTDLDHTTRWRKLKEDIILPAEICEKFLEIYQRINRINDNIANLFRDRFRTRLDA 478
EHL + LD T +KLK D + A + K + + + DN A+L D F +++
Sbjct: 88 EHLETIQKLDSTLSRQKLKYDDMRQA-LSVKIYTLENECSNLQDNYADLQND-FEVQIEK 145
Query: 479 IK 484
K
Sbjct: 146 FK 147
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
protein F21C10.7 protein.
Length = 2541
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +2
Query: 188 IVSRFKDRMAHKVVAEITSLYDTSPDSLLEICLEY----LVEHLNIVTDLDHTTRWRKLK 355
++SR A K +YD SL E+C+ + ++ L+I ++ + WR L
Sbjct: 100 LLSRADSLGAEKTNPNEAIVYDEMAKSLREVCMHFGFFSILTQLHINQPINLRSTWRSLN 159
Query: 356 EDIILPAEICEKFLEIY 406
++L + + ++ Y
Sbjct: 160 RQLLLRGYMLRETVQFY 176
>U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 16 protein.
Length = 342
Score = 28.7 bits (61), Expect = 3.5
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = -1
Query: 601 VYCFQ*HWREIFALYEFNFLRFV-LHKESKSLISDAGIT*FYGVEACTKSIAKQVSNIVV 425
++CF + I AL +RFV +ES+ IS +G F VE + S +++
Sbjct: 192 IFCF---FLAILALILLQVVRFVNKRRESRIEISLSGR--FQIVENIDTTTFIS-SILII 245
Query: 424 NAIDSLVYF*KFFTYFSRKYYVFLEFSPASCMIQICYYI 308
N I S++Y FT + ++ F+ PA ++ +Y+
Sbjct: 246 NMIMSVIYIVGTFTLRNFQFDAFINNQPALATVKTIFYL 284
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 158 INSFAAHNY*IVSRFKDRMAHKVVAEITSLYDTSPDSLL 274
I++ H+Y + DR +H++ T +Y+TS SL+
Sbjct: 755 IDTRIVHHYERFKKLADRESHRIAKSWTKIYETSSYSLM 793
>U80029-10|AAB37589.1| 460|Caenorhabditis elegans Hypothetical
protein T20D4.8 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +2
Query: 260 PDSLLEICLEYLVEHLNIVT-DLDHTTRWRKLKEDIILPAEICEKFLEIYQRINRINDNI 436
PDSL+ L+ +E LN T D D+ + K+ + + EKF + + + +N +
Sbjct: 79 PDSLMIWYLK--IELLNTTTADFDY---FFKMHSEYVKKENKSEKFSFVMETLENVNVTL 133
Query: 437 ANLFRDRFRTRLDAIKLRNSRITDEGFRFL 526
N+F + ++ + N +E +FL
Sbjct: 134 TNIFYNYLHANIEVLNQLNLPAAEEN-KFL 162
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 481 YGVEACTKSIAKQVSNI 431
YGVEAC+K+I +++N+
Sbjct: 1607 YGVEACSKAITTEMNNV 1623
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 481 YGVEACTKSIAKQVSNI 431
YGVEAC+K+I +++N+
Sbjct: 1607 YGVEACSKAITTEMNNV 1623
>U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein.
Length = 846
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 263 DSLLEICLEYLVEHLNIVTDLDHTTRWRKLKEDIILPAEICEKFLEIYQRINRINDNIAN 442
D +++ E ++E ++ VTD RWRK++ ++ K L ++I +I I
Sbjct: 567 DQMMKQDPETVMELISKVTDWLVKARWRKVQYGAWSVIKLKNKILYRAEKIKKIQAWIRG 626
Query: 443 -LFRDRFRTRL 472
L R RF RL
Sbjct: 627 YLVRKRFHKRL 637
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 481 YGVEACTKSIAKQVSNI 431
YGVEAC+K+I +++N+
Sbjct: 1607 YGVEACSKAITTEMNNV 1623
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 263 DSLLEICLEYLVEHLNIVTDLDHTTRWRKLKEDIILPAEICEKFLEIYQRINRINDNIAN 442
D +++ E ++E ++ VTD RWRK++ ++ K L ++I +I I
Sbjct: 770 DQMMKQDPETVMELISKVTDWLVKARWRKVQYGAWSVIKLKNKILYRAEKIKKIQAWIRG 829
Query: 443 -LFRDRFRTRL 472
L R RF RL
Sbjct: 830 YLVRKRFHKRL 840
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = -1
Query: 571 IFALYEFNFLRFVLHKESKSLISDAGIT*FYGV-----EACTKSIAKQVSNIVVNAIDSL 407
+F L NF F L K+ I I F+ + T + ++ + + + ++
Sbjct: 354 LFLLENRNFPIFFLRSFEKTPIFWEKIYPFFRIFRFFSNFYTFPVVFEIDFLPIFLVANI 413
Query: 406 VYF*KFFTYFSRKYYVFLEFSPASCMIQICYY 311
V F F+ YF R + V FS S + C Y
Sbjct: 414 VIFHSFYLYFPRFFQVSHNFSSFSVLFIYCIY 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,958
Number of Sequences: 27780
Number of extensions: 275032
Number of successful extensions: 817
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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