Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A14
(619 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78290.2 68414.m09124 serine/threonine protein kinase, putati... 29 3.3
At1g78290.1 68414.m09123 serine/threonine protein kinase, putati... 29 3.3
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 28 4.3
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 7.5
At1g25280.1 68414.m03137 F-box family protein / tubby family pro... 27 7.5
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O... 27 7.5
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O... 27 7.5
At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ... 27 10.0
At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein ... 27 10.0
At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein ... 27 10.0
At1g07330.1 68414.m00781 hypothetical protein 27 10.0
>At1g78290.2 68414.m09124 serine/threonine protein kinase, putative
similar to serine-threonine protein kinase [Triticum
aestivum] gi|2055374|gb|AAB58348
Length = 343
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 398 EIYQRINRINDNIANLFRDRFRTRLDAIKL--RNSRITDEGFRFLMEHK 538
EI + I N +A L RD+F L A+K R +I + R +M H+
Sbjct: 5 EIVKDIGSGNFGVAKLVRDKFSKELFAVKFIERGQKIDEHVQREIMNHR 53
>At1g78290.1 68414.m09123 serine/threonine protein kinase, putative
similar to serine-threonine protein kinase [Triticum
aestivum] gi|2055374|gb|AAB58348
Length = 343
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 398 EIYQRINRINDNIANLFRDRFRTRLDAIKL--RNSRITDEGFRFLMEHK 538
EI + I N +A L RD+F L A+K R +I + R +M H+
Sbjct: 5 EIVKDIGSGNFGVAKLVRDKFSKELFAVKFIERGQKIDEHVQREIMNHR 53
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 230 AEITSLYDTSPDSLLEICLEYLVEHLN 310
AE++ L+ T PD L ++ L++L+E ++
Sbjct: 5 AELSELFHTWPDELEDLALDHLIEDIH 31
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 365 ILPAEICEKFLEIYQ-RINRINDNIANLFRDRFRTRLDAIKLRNSRITDEGFRFLMEHKP 541
IL ++ F+ Y RI DN+ + D T L + K+RN+RI D L +
Sbjct: 30 ILSSQTAVAFIGTYGVNYGRIADNLPS--PDAVATLLKSAKIRNTRIYDADHSVLTAFRG 87
Query: 542 QEVELI 559
+E+I
Sbjct: 88 TGIEII 93
>At1g25280.1 68414.m03137 F-box family protein / tubby family
protein similar to Tubby protein homolog (SP:O88808)
[Rattus norvegicus]; contains Pfam PF00646: F-box domain
and Pfam PF01167: Tub family;
Length = 445
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +2
Query: 341 WRKLKEDIILPAEICEKF-LEIYQRINRINDNIANLF--RDRFRTRLDAIKLRNSRITDE 511
WR + ++I+L EIC K + + D + F RD+ + + + E
Sbjct: 97 WRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVE 156
Query: 512 GFRFLMEHKPQEVELIQCEYLSPMSLETINRNS 610
+FL+ K + + EY+ M + I+R+S
Sbjct: 157 NGKFLLSAK-RTRRTTRTEYIISMDADNISRSS 188
>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -2
Query: 447 NKLAILSLMRLIRWYISR--NFSHISAGSIMSSLSFRQRVV*SKSVTILRC 301
N L +L++ L R+ +R N +++ +M +++F + V VTIL C
Sbjct: 307 NSLRVLAINILGRFLSNRDNNIRYVALNMLMKAITFDDQAVQRHRVTILEC 357
>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -2
Query: 447 NKLAILSLMRLIRWYISR--NFSHISAGSIMSSLSFRQRVV*SKSVTILRC 301
N L +L++ L R+ +R N +++ +M +++F + V VTIL C
Sbjct: 307 NSLRVLAINILGRFLSNRDNNIRYVALNMLMKAITFDDQAVQRHRVTILEC 357
>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
similar to single-strand DNA endonuclease-1 [Oryza
sativa (japonica cultivar-group)]
gi|16923283|dbj|BAB72003
Length = 337
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 71 CKNESFICERTSLCMWVXISRNDINWQVSINSFA 172
C+N + ER SL W + + +N +S N FA
Sbjct: 156 CRNMPWSVERDSLVCWFLLPSDMVNSIISPNKFA 189
>At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 316
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = -1
Query: 580 WREIFALYEFNFLRFVLHKESKSLISDAGIT*FYGVEACTKSIAKQVSNIVVNAIDSLVY 401
W + LY + F+L K L +T +YGV+ +S+A +V +V ++ +
Sbjct: 211 WHFLLCLYGTVAIGFILAGRVKELRVVHILTVYYGVDKSFRSLAPRVIQWLVGTYNTQIL 270
Query: 400 F*KFFTYFSRKYYVFLEFSPASCM 329
F S F + C+
Sbjct: 271 LMVFLAIVSLLLAGFFAYHANLCL 294
>At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 397
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = -1
Query: 580 WREIFALYEFNFLRFVLHKESKSLISDAGIT*FYGVEACTKSIAKQVSNIVVNAIDSLVY 401
W + LY + F+L K L +T +YGV+ +S+A +V +V ++ +
Sbjct: 211 WHFLLCLYGTVAIGFILAGRVKELRVVHILTVYYGVDKSFRSLAPRVIQWLVGTYNTQIL 270
Query: 400 F*KFFTYFSRKYYVFLEFSPASCM 329
F S F + C+
Sbjct: 271 LMVFLAIVSLLLAGFFAYHANLCL 294
>At1g07330.1 68414.m00781 hypothetical protein
Length = 685
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 296 VEHLNIVTDLDHTTRWRKLKEDIILPAEICEKFLEIYQR--INRINDNIANLFRDRFRTR 469
VE L+ TD++ + + + P E +K I++ + IN+ I+ +R +
Sbjct: 512 VEGLSDGTDINGRSEEEESSKSGRFPLENSDKGFYIHEESTVPHINEVISRREEERVQNL 571
Query: 470 LDAIKLRNSRITDEGFRFLMEHKPQE 547
D +K+ + E F +PQE
Sbjct: 572 TDEMKINDDSDEPEAFERRTNQEPQE 597
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,173
Number of Sequences: 28952
Number of extensions: 246516
Number of successful extensions: 672
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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