Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A09
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 36 0.006
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.72
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.3
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 28 1.7
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 2.9
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 3.9
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 27 3.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.1
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 26 6.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 6.7
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 25 8.9
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 544 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
+D Y+Y + E E+E ++K FSSV Q E LS + LI+E L +AKF + R +
Sbjct: 410 NDLYWYLVVEIEDEPVSKLFSSVMFLFQKE-LSKSVEGRLIRETLSAQAKFVEKLLRISK 468
Query: 724 S 726
S
Sbjct: 469 S 469
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 460 HKPEPENAFNILQTPSARTRDSSFSVDSDDNY-FYALPEDEEEYLTKEFSSVYEDAQCER 636
+ P +N F TP++R + ++ + FY + E+ E++ T E +YE R
Sbjct: 331 YSPWYKNNFGA-STPASRVSRNPYTAAQPRKHTFYQMYENIEKFFTTENGGLYESIVSGR 389
Query: 637 LSNMTKN 657
LS+ +++
Sbjct: 390 LSHFSRS 396
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 535 VDSDDNYFYALPEDEEEYLT--KEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 708
VDSDDN + ++EEE T KE +Q E + MT EL + +L + L
Sbjct: 546 VDSDDNIELSDSDEEEEKATARKESDEKGSSSQKELVDRMT--ELASQSILTPNDLKKLE 603
Query: 709 KRTERSKMKRM 741
+ E++ + R+
Sbjct: 604 ELREQAGVDRL 614
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 451 MEIHKPEPENAFNILQTPSARTRDSS 528
+E + E +NAFNILQT S RD +
Sbjct: 3 LEENVKEAKNAFNILQTLSVEDRDDA 28
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 457 IHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCER 636
I KP L+T +SS +V+ D+N + P+ + + K S + + ++
Sbjct: 93 IEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQK 152
Query: 637 LSNMTKNEL 663
+ + KN+L
Sbjct: 153 V--LKKNKL 159
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 58 FFYHEVLFSRPLEPPFYL 5
FF +L R LEPPFYL
Sbjct: 485 FFVESMLRPRKLEPPFYL 502
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 526 SFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFEN 702
SFS ++ YF +LP +E+ T+ S +++ C+R + + L+ +L + + +
Sbjct: 163 SFSFSNNTQYFASLP--QEDVCTENLSPLFKLLPCKRKAGIA--SLLDSHLFFDTDWHS 217
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 607 SVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDN 759
S Y+D N+ K L++EY +E F + KR E ++ +E+KD+
Sbjct: 922 SDYKDGLKVHEYNVIKG-LLEEYYNVEKLFSGINKREEDVILRLRDENKDD 971
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 556 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 735
F+ L E+ + + + + + N K EL Q+ L + +K T+RS K
Sbjct: 356 FHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNK 415
Query: 736 RM 741
R+
Sbjct: 416 RL 417
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 29 SRKEYFVIKKIHTVGSTEVFWSYKSVYY 112
S K + + ++ +FW YKS+YY
Sbjct: 33 SLKSHLLFLLVYVTRYLNLFWRYKSLYY 60
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 451 MEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEE 582
+E P+P + + S+F+ D+D NY PED+E
Sbjct: 23 IESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLK-PEDDE 65
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 99 NQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWRTDAITS 230
N T R + ++N + G+ +F +G G YH D T+
Sbjct: 272 NTATRRALMNGVLNGRNGLGSIFVFASGNGGHYHDNCNFDGYTN 315
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 505 SARTRDSSFSVDSDDNYFYALPEDEEEYLTKE-FSSV 612
S ++D+ S F +PEDE+E+L K FSSV
Sbjct: 36 STSSKDTDTSSHMTHFGFKDVPEDEKEHLVKNVFSSV 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,197
Number of Sequences: 5004
Number of extensions: 55565
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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