Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A09
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.19
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 31 1.0
05_01_0372 - 2913518-2916562,2916674-2917528 31 1.3
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 31 1.3
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 30 2.3
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780... 30 2.3
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 3.1
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 29 5.3
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/92 (25%), Positives = 42/92 (45%)
Frame = +1
Query: 469 EPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNM 648
E + F+ ++ P R R+ F ++Y L + K + +D +C RL +
Sbjct: 459 EDDERFSAVERP--REREDLF-----ESYLMELQKKTSTQWRKVQERLEDDERCSRLEKI 511
Query: 649 TKNELIQEYLLLEAKFENLVKRTERSKMKRME 744
+ E+ QEY+ K E KR + +++R E
Sbjct: 512 DRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQE 543
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 415 KTHAPFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEE 585
K HA N + + KP F + RT +D++D+YF +L E++E+
Sbjct: 164 KWHASVNKHWVALVYKKPHVAYCFACEECYFIRTEHFGVVMDNEDDYFISLREEDEK 220
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +1
Query: 499 TPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYL 678
+P + +D DD EDEEEY +Q RL+ KN EY
Sbjct: 915 SPDQGGNEGDSDIDLDDYSDIEQDEDEEEYDQLPPFKPLTKSQLARLTKEQKNAYFDEY- 973
Query: 679 LLEAKFENLVKRTERSKMKRMEEDK 753
+ + + L K+ + +++R++E K
Sbjct: 974 --DYRVKLLQKKQWKDEIRRLKEMK 996
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +1
Query: 508 ARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC--ERLSNMTKNELIQEYLL 681
A+ +++ +DSD ++ +P+D EE L S E + C +R S M + E + E L
Sbjct: 479 AQHEENTLPLDSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGM-EIEDVPEPDL 537
Query: 682 LEAKFENLVKRTE 720
+E E++ K TE
Sbjct: 538 IEKFKEDVEKLTE 550
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 556 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 735
F P + L FS + DA + + M++N +I E++ E + +NLV E +
Sbjct: 242 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 300
Query: 736 RMEEDKD 756
MEE D
Sbjct: 301 PMEEMND 307
>05_07_0352 -
29475855-29476330,29476421-29477165,29477689-29478081,
29478167-29478473,29478694-29479019
Length = 748
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 556 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 735
F P + L FS + DA + + M++N +I E++ E + +NLV E +
Sbjct: 219 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 277
Query: 736 RMEEDKD 756
MEE D
Sbjct: 278 PMEEMND 284
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 529 NWNHECVLKASEVY*THFRVQVCEFPSKIDYC*TGHEFSSKQFYESDY 386
NWN V KAS++ + + +V P KI++ HE + + Y +DY
Sbjct: 58 NWN---VQKASKMMKSAVKWRVSYMPQKINWDDVAHEAETGKIYRADY 102
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 266 GFCFSTMDG--APTTGDCVGSPSSMIRLSASIR 174
G+C S DG PT G C G I+LS +R
Sbjct: 160 GYCVSRCDGEKVPTEGPCNGKGCCSIKLSRDLR 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,667
Number of Sequences: 37544
Number of extensions: 302222
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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