Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A09
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3) 48 1e-05
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0) 29 5.5
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 28 7.2
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09) 28 7.2
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3)
Length = 225
Score = 47.6 bits (108), Expect = 1e-05
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Frame = +1
Query: 415 KTHAPFNNNQFLMEIH-KPEPENAFNILQTP-SARTRDSSFSVDSD---DNYFYALPE-- 573
+T AP N QFLM+ H K EP + +P S+ SS SV + ++ E
Sbjct: 44 RTAAPENTTQFLMDDHEKFEPFVLSSPSLSPNSSGCEFSSSSVRGSPVCERDLQSVTELV 103
Query: 574 --DEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKR 714
+E Y K+F+ VY+ E L ++K ELI +Y+ LE K ENL+++
Sbjct: 104 GNFDELYFEKDFNDVYDSIHAETLLGLSKQELIYKYMELEKKEENLLRQ 152
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 652 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 756
+ EL+QE L++ K E L+ + SK + M+EDKD
Sbjct: 507 EKELLQEMLVVVEKREQLIAEMDESKHRYMDEDKD 541
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 529 FSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 708
F++D ++ F +PED E+ SS+Y + N ++ E + + +E+ EN+
Sbjct: 500 FNIDKVESVFEKMPEDIEDENESTLSSMYGQIRVSLKINNSQVESDRVNVFIESVLENIF 559
Query: 709 KR-TERSKMKRMEEDKD 756
+ T ++ M+ DK+
Sbjct: 560 RMFTIQNLYNSMKIDKN 576
>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
Length = 727
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 682 LEAKFENLVKRTERSKMKRMEEDK 753
L+A+FEN+ K+ E K+ EE+K
Sbjct: 371 LKARFENMAKQEEEDARKKAEEEK 394
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = -3
Query: 571 QAEHKNSYHLNLH*NWNHECVLKASEVY*THFRVQVCEFPSKIDYC*TGHEFSSKQFYES 392
Q + YHL H ++ +S+ Y + ++ S DY H S Q+ S
Sbjct: 260 QYNSSSDYHLMYHMT-SYARYNSSSDYYLMYHMTSYAQYNSSSDYHLMYHMTSYAQYNSS 318
Query: 391 DYFF*VFRFSSY 356
Y++ ++ +SY
Sbjct: 319 SYYYLMYHMTSY 330
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 487 NILQTPSARTRDSSFSVDSDDNYFYAL 567
++ QTP AR+ +S SV + +YFY L
Sbjct: 785 SLRQTPIARSTHASLSVSVEPDYFYIL 811
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 96 INQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWR 212
IN C DC S + EG I+ +P G S WR
Sbjct: 897 INMCNYSQDCGSTLRASEGTINSPNWPQGYKGSKTCTWR 935
>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
Length = 337
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +1
Query: 511 RTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQ---CERLSNMTK---NELIQE 672
+ + F+ +N ++L E EE KE+ S ++D + +R K NEL +
Sbjct: 108 KLEEMGFNDGDANNKSHSLQETYEER-RKEYMSQFQDKEEKMRQRFVQKVKDKENELKKA 166
Query: 673 YLLLEAKFENLVKRTERSKMKRMEEDK 753
L AKF++L K+ + + K++EE +
Sbjct: 167 EQELHAKFDHL-KKVQAEEKKKLEEKR 192
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +1
Query: 511 RTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQ---CERLSNMTK---NELIQE 672
+ + F+ +N ++L E EE KE+ S ++D + +R K NEL +
Sbjct: 213 KLEEMGFNDGDANNKSHSLQETYEER-RKEYMSQFQDKEEKMRQRFVQKVKDKENELKKA 271
Query: 673 YLLLEAKFENLVKRTERSKMKRMEEDK 753
L AKF++L K+ + + K++EE +
Sbjct: 272 EQELHAKFDHL-KKVQAEEKKKLEEKR 297
>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 457 IHKPEPENAF-NILQTPSARTRDSSFSVDSDDNYFYALPEDEEE 585
+ + EPE+ N + A+ + +D DD ++LP+DE++
Sbjct: 567 VFRAEPESLLKNAVTEYMAKKKGHQQVIDQDDEIVFSLPDDEKD 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.130 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,230
Number of Sequences: 59808
Number of extensions: 361038
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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