Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A09
(762 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006460-1|AAH06460.1| 359|Homo sapiens hexamethylene bis-aceta... 56 1e-07
AB021179-1|BAA36166.1| 359|Homo sapiens HEXIM1 protein protein. 56 1e-07
BC025970-1|AAH25970.1| 286|Homo sapiens HEXIM2 protein protein. 48 4e-05
BC012474-1|AAH12474.1| 286|Homo sapiens hexamthylene bis-acetam... 48 4e-05
BC003531-1|AAH03531.1| 286|Homo sapiens HEXIM2 protein protein. 48 4e-05
AY598322-1|AAT06733.1| 286|Homo sapiens L3 protein. 48 4e-05
AK056946-1|BAB71319.1| 286|Homo sapiens protein ( Homo sapiens ... 48 4e-05
AB209926-1|BAD93163.1| 217|Homo sapiens caveolin 1 variant prot... 31 5.9
>BC006460-1|AAH06460.1| 359|Homo sapiens hexamethylene
bis-acetamide inducible 1 protein.
Length = 359
Score = 56.0 bits (129), Expect = 1e-07
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +1
Query: 424 APFNNNQFLMEIH-KPEPENAFNILQTPSARTRDSSFSVD------SDDNYFYALPEDEE 582
AP+N QFLM+ H + EP+ + +A D + D +D + D
Sbjct: 201 APYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGS 260
Query: 583 EYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 735
E+L ++FS YE E L NM+K ELI+EYL LE + R +++
Sbjct: 261 EFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLE 311
>AB021179-1|BAA36166.1| 359|Homo sapiens HEXIM1 protein protein.
Length = 359
Score = 56.0 bits (129), Expect = 1e-07
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +1
Query: 424 APFNNNQFLMEIH-KPEPENAFNILQTPSARTRDSSFSVD------SDDNYFYALPEDEE 582
AP+N QFLM+ H + EP+ + +A D + D +D + D
Sbjct: 201 APYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGS 260
Query: 583 EYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMK 735
E+L ++FS YE E L NM+K ELI+EYL LE + R +++
Sbjct: 261 EFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLE 311
>BC025970-1|AAH25970.1| 286|Homo sapiens HEXIM2 protein protein.
Length = 286
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/100 (32%), Positives = 44/100 (44%)
Frame = +1
Query: 424 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEF 603
AP+N QFLM PE N L P + S S +S+ E+ K+F
Sbjct: 139 APYNTTQFLMNDRDPEEPN----LDVPHGISHPGS-SGESEAGDSDGRGRAHGEFQRKDF 193
Query: 604 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
S YE E L +K EL+++YL LE + + T R
Sbjct: 194 SETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRR 233
>BC012474-1|AAH12474.1| 286|Homo sapiens hexamthylene bis-acetamide
inducible 2 protein.
Length = 286
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/100 (32%), Positives = 44/100 (44%)
Frame = +1
Query: 424 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEF 603
AP+N QFLM PE N L P + S S +S+ E+ K+F
Sbjct: 139 APYNTTQFLMNDRDPEEPN----LDVPHGISHPGS-SGESEAGDSDGRGRAHGEFQRKDF 193
Query: 604 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
S YE E L +K EL+++YL LE + + T R
Sbjct: 194 SETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRR 233
>BC003531-1|AAH03531.1| 286|Homo sapiens HEXIM2 protein protein.
Length = 286
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/100 (32%), Positives = 44/100 (44%)
Frame = +1
Query: 424 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEF 603
AP+N QFLM PE N L P + S S +S+ E+ K+F
Sbjct: 139 APYNTTQFLMNDRDPEEPN----LDVPHGISHPGS-SGESEAGDSDGRGRAHGEFQRKDF 193
Query: 604 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
S YE E L +K EL+++YL LE + + T R
Sbjct: 194 SETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRR 233
>AY598322-1|AAT06733.1| 286|Homo sapiens L3 protein.
Length = 286
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/100 (32%), Positives = 44/100 (44%)
Frame = +1
Query: 424 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEF 603
AP+N QFLM PE N L P + S S +S+ E+ K+F
Sbjct: 139 APYNTTQFLMNDRDPEEPN----LDVPHGISHPGS-SGESEAGDSDGRGRAHGEFQRKDF 193
Query: 604 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
S YE E L +K EL+++YL LE + + T R
Sbjct: 194 SETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRR 233
>AK056946-1|BAB71319.1| 286|Homo sapiens protein ( Homo sapiens
cDNA FLJ32384 fis, clone SKMUS1000104, weakly similar to
Homo sapiens mRNA for HEXIM1 protein, complete cds. ).
Length = 286
Score = 48.0 bits (109), Expect = 4e-05
Identities = 32/100 (32%), Positives = 44/100 (44%)
Frame = +1
Query: 424 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEF 603
AP+N QFLM PE N L P + S S +S+ E+ K+F
Sbjct: 139 APYNTTQFLMNDRDPEEPN----LDVPHGISHPGS-SGESEAGDSDGRGRAHGEFQRKDF 193
Query: 604 SSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 723
S YE E L +K EL+++YL LE + + T R
Sbjct: 194 SETYERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRR 233
>AB209926-1|BAD93163.1| 217|Homo sapiens caveolin 1 variant
protein.
Length = 217
Score = 30.7 bits (66), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 429 RGMSFRQNNFTKAIISFRFFVSPPITPS 346
RG RQ +F+ + F FF+ PP+ PS
Sbjct: 11 RGFPRRQADFSSLVFLFAFFLPPPLPPS 38
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.130 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,956,230
Number of Sequences: 237096
Number of extensions: 1670202
Number of successful extensions: 2749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -