Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A09
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.77 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.77 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.77 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.77 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 514 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 690
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 691 KFENLVKRTERSKMK 735
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 514 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 690
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 691 KFENLVKRTERSKMK 735
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 514 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 690
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 691 KFENLVKRTERSKMK 735
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +1

Query: 514 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEY-LLLEA 690
           +RD +      D  +  L  +EE+ L +  S        ER  N  KNE  +EY    E 
Sbjct: 5   SRDRNREYRKKDRQYEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNE--REYRKYRET 62

Query: 691 KFENLVKRTERSKMK 735
             E    RTER + +
Sbjct: 63  SKERSRDRTERERSR 77


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 692 FASNRRYSCISSFFVIFDRRSHCASSY 612
           FAS R YS  S   V   R S C  +Y
Sbjct: 429 FASGRYYSAYSLHHVRSSRESSCEQTY 455


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 469 EPENAFNILQTPSARTRDSSFSVD 540
           EP+N+ N    P  R  + + SVD
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVD 384


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 469 EPENAFNILQTPSARTRDSSFSVD 540
           EP+N+ N    P  R  + + SVD
Sbjct: 361 EPDNSSNFAMKPLVRQPEDTMSVD 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,926
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)