Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A09
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM ...    33   0.16 
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac...    31   0.63 
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ...    30   1.5  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    30   1.5  
At4g27595.1 68417.m03964 protein transport protein-related low s...    29   3.4  
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil...    29   4.5  
At1g27870.1 68414.m03415 hypothetical protein                          29   4.5  
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    28   7.8  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    28   7.8  
At4g00231.1 68417.m00026 ataxin-related contains weak similarity...    28   7.8  

>At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 226

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 457 IHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDE 579
           IH  EP + F    + +A +  SS S D  DNY +A P+D+
Sbjct: 62  IHDVEPSSTFTASTSTAANSSSSSASYDDSDNYGFA-PDDD 101


>At1g12980.1 68414.m01507 AP2 domain-containing transcription
           factor, putative / enhancer of shoot regeneration (ESR1)
           similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
           contains PF|00847 AP2 domain; identical to cDNA enhancer
           of shoot regeneration ESR1 GI:18028939, enhancer of
           shoot regeneration ESR1 [Arabidopsis thaliana]
           GI:18028940
          Length = 328

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 466 PEPENAF-NILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC 630
           PEP  +F N   +PSAR    S  +DS    FY  P  +  Y T+  S    DA C
Sbjct: 121 PEPRFSFSNKKSSPSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQ--SIFLRDASC 174


>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
           Pfam profile PF03108: MuDR family transposase
          Length = 462

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 466 PEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERL 639
           P+ E    I+       +     V    NY   +P ++EEY T +  S  E+ Q ERL
Sbjct: 277 PDSELEAEIVDEEDVNVKAEEIQVFDIRNYEEQIPYEDEEYPTTDDESGDEEVQAERL 334


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 619 DAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRME 744
           D +C RL  + + E+ QEYL    + E   K+ ++ ++K++E
Sbjct: 586 DERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVE 627


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 619  DAQCERLSNMTKNELIQEYLLLEAKFEN-LVKRTERSKMKRMEEDKD 756
            + + E LSN+ K+ L++E  L +  FEN  +K  E   +K  EE  D
Sbjct: 871  EKKIEELSNLNKSLLVKESELQDVVFENEKLKSKEALSLKTTEELSD 917


>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 319

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 427 PFNNNQFLMEIHKPEPENAFNILQT 501
           P+NN ++ ++I + +P NA +I++T
Sbjct: 151 PYNNKKYFIDIVETKPANAISIIET 175


>At1g27870.1 68414.m03415 hypothetical protein
          Length = 213

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 294 LFDVSVNASRFLFFNDGWRPD-HW*LRRFAIFYDKIIRVH*ETIID 160
           LFD+ +N S+  F    W  D HW LR+F   +   IR H  T  D
Sbjct: 134 LFDL-INGSKVYFGVHNWIRDIHWWLRKFESIHFNWIRRHHNTPAD 178


>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 586 YLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDN 759
           Y T  +  +YED  CE L +     LI     L+ +     K+ ++  +K+ E+ K N
Sbjct: 66  YDTGLYRVIYEDGDCEELESGDLRRLIISDSYLDDELRVRRKKLDKLILKKEEKKKRN 123


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 586 YLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDN 759
           Y T  +  +YED  CE L +     LI     L+ +     K+ ++  +K+ E+ K N
Sbjct: 66  YDTGLYRVIYEDGDCEELESGDLRRLIISDSYLDDELRVRRKKLDKLILKKEEKKKRN 123


>At4g00231.1 68417.m00026 ataxin-related contains weak similarity to
           Ataxin-10 (Spinocerebellar ataxia type 10 protein)
           (Brain protein E46 homolog) (Swiss-Prot:Q9UBB4) [Homo
           sapiens]
          Length = 475

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 508 ARTRDSSFSVDSDDNYFYALPED----EEEYLTKEFSSVYEDAQCERLSN 645
           A T  +S SV S ++Y+  L       E+ Y  K FS +YEDA+ E  S+
Sbjct: 185 AETLRTSSSVGSVEDYWLKLLVSRICVEDGYFLKLFSKLYEDAENEIFSS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,955
Number of Sequences: 28952
Number of extensions: 264783
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)