Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_A04
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 564  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 743
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 744  GGFAPNIQNNKDAL---YLIQDAIXKAG 818
               +   QN +D L   Y I+D   + G
Sbjct: 1196 ETVSTVPQNKRDDLVNPYWIEDPDVRKG 1223


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 564  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 743
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 744  GGFAPNIQNNKDAL---YLIQDAIXKAG 818
               +   QN +D L   Y I+D   + G
Sbjct: 1196 ETVSTVPQNKRDDLVNPYWIEDPDVRKG 1223


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 564  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 743
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 744  GGFAPNIQNNKDAL---YLIQDAIXKAG 818
               +   QN +D L   Y I+D   + G
Sbjct: 1196 ETVSTVPQNKRDDLVNPYWIEDPDVRKG 1223


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +3

Query: 564  NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 743
            N+ +       +L   E  I P+G  +   +M   S   HH    + E+ G +S    D 
Sbjct: 1136 NIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDESANETDS 1195

Query: 744  GGFAPNIQNNKDAL---YLIQDAIXKAG 818
               +   QN +D L   Y I+D   + G
Sbjct: 1196 ETVSTVPQNKRDDLVNPYWIEDPDVRKG 1223


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 264 LSVQELHEHQWRHQRVQLPGTSQALLPD 181
           +S +  H+HQ     VQ+P    A+ PD
Sbjct: 19  VSAEHPHQHQHYGAAVQVPQGGGAVQPD 46


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 551 CTSFQCDQWRITCWK 595
           C + +C+  + TCW+
Sbjct: 873 CVTCKCENGKPTCWR 887


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 754 AKPPSSPTAVESNP 713
           A+PPS+P+A  S P
Sbjct: 413 ARPPSTPSADGSKP 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,658
Number of Sequences: 336
Number of extensions: 4030
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)