Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_A02
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 129 5e-31
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 128 1e-30
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 1.6
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.8
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 6.4
05_03_0416 + 13684604-13688050 26 6.4
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 8.5
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 26 8.5
07_03_1237 + 25073010-25073513 26 8.5
07_03_0039 - 12718972-12720699 26 8.5
07_01_0385 - 2871628-2872131 26 8.5
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 129 bits (312), Expect = 5e-31
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +1
Query: 34 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 213
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 214 CKRTVXGGAWVFSTTAASSCRSAVRRLRE 300
C + GGA+ +T +A + RS +RRLRE
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 128 bits (309), Expect = 1e-30
Identities = 56/86 (65%), Positives = 66/86 (76%)
Frame = +1
Query: 43 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 222
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 223 TVXGGAWVFSTTAASSCRSAVRRLRE 300
GGA+ +T +A + RS +RRLRE
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRRLRE 118
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 160 CGKDAMKRSCVGIWSCKRCKRTVXGGAWVFSTTAASSCRSAVRRLR 297
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 124 EVTQHAKYTCSFCGKDAM 177
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.2 bits (55), Expect = 6.4
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +1
Query: 16 VSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCV 192
+ RF ++V K G Y L K AKYT G A RS
Sbjct: 63 MKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSSA 122
Query: 193 GIWSCKRCKRTV 228
G SCK ++ V
Sbjct: 123 GAVSCKLREKNV 134
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 2 LCSL--LYRRGLPKWPNVPKRLELLANMAHVTV 94
LCSL L+ +G P ++P+ + L ++ H+T+
Sbjct: 1015 LCSLQSLFIKGTPMMDSLPQSIGCLTSLTHLTI 1047
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 2 LCSLLYRRGLPKWP 43
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 2 LCSLLYRRGLPKWPNVPKRLELLANMAHV 88
+ SL Y+RGLP P++ + +E + ++ V
Sbjct: 244 MASLQYKRGLPYAPHIMRMIEHVTHLRFV 272
>07_03_1237 + 25073010-25073513
Length = 167
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 178 KRSCVGIWSCKRCKRTVXGGAWVFSTTAASSC 273
KR G+ C C RT+ GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 251 ENTQAPPXTVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 99
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>07_01_0385 - 2871628-2872131
Length = 167
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +1
Query: 145 YTCSFCGKDAMKRSCVGIWSCKRCKRTVXGGAW 243
+ C FC K K +G K V GG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,464,428
Number of Sequences: 37544
Number of extensions: 187450
Number of successful extensions: 483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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