Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P23
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)       156   6e-39
SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score =  156 bits (379), Expect = 6e-39
 Identities = 74/89 (83%), Positives = 80/89 (89%)
 Frame = -3

Query: 309 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG 130
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P LRKSEIEYYA+LAKTG
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQLRKSEIEYYAMLAKTG 60

Query: 129 VHHYSGNNIELGTACGKYYRVCTLAITXP 43
           VHHY+GNNIELGTACGKY+RV  L+IT P
Sbjct: 61  VHHYTGNNIELGTACGKYFRVSVLSITDP 89


>SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 207 LVIIAKNAPPLRKSEIEYYALLAKTGVHH 121
           L++ A N PP + SE  Y+ALL     H+
Sbjct: 270 LILTAPNVPPQKGSENLYFALLTYRNPHY 298


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 371 GEDSLAFTLPKWLQQRNRKR 312
           G+DS+   L KW Q++ RKR
Sbjct: 152 GQDSMRERLEKWRQEKQRKR 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,006
Number of Sequences: 59808
Number of extensions: 227518
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)