Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_P23
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical ... 160 4e-40
L17337-6|AAA28221.2| 44|Caenorhabditis elegans Hypothetical pr... 32 0.18
Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical pr... 30 0.73
Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical pr... 26 9.0
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 26 9.0
>AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical
protein Y106G6H.3 protein.
Length = 113
Score = 160 bits (388), Expect = 4e-40
Identities = 73/97 (75%), Positives = 85/97 (87%)
Frame = -3
Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
M A K +K E+INSRL++VMK+G+Y LGYKQTLK+L GKAKLVIIA N PPLRKSEI
Sbjct: 1 MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60
Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 49
EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+T
Sbjct: 61 EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVT 97
>L17337-6|AAA28221.2| 44|Caenorhabditis elegans Hypothetical
protein ZK686.1 protein.
Length = 44
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3
Query: 282 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
+VMK+G+Y L Y+Q LK+L AKLVI K+
Sbjct: 1 MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31
>Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical
protein LLC1.3 protein.
Length = 495
Score = 29.9 bits (64), Expect = 0.73
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 366 GFISIYAPKMVAAKKQKKTIESINSRLALV 277
GF +I P V AKK ++E+IN+R L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167
>Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical
protein F53H4.4 protein.
Length = 275
Score = 27.5 bits (58), Expect = 3.9
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = -3
Query: 360 ISIYAPKMVAAKKQKKTIESINSRLALVM------KSGKYCLGYKQTLKTLRQGKAKLVI 199
+S P M A K + + + N RLA+ M +SG Y Q ++LR +
Sbjct: 171 LSKLTPSMFAEKARPRRVRERNGRLAVRMSRISWNRSGLYYNAIIQFFESLRG-----TV 225
Query: 198 IAKNAPPLRKSEIEYYALLAKTGVH 124
I + PL + + Y +L T H
Sbjct: 226 ITQGEQPLCEKSVTYQEMLKHTLAH 250
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 37 SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
S G C G CA +S + + CC +N P + V TC S
Sbjct: 895 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 932
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 37 SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
S G C G CA +S + + CC +N P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 37 SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
S G C G CA +S + + CC +N P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274
>Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical
protein F55B12.6 protein.
Length = 350
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 204 PALLCLVEEFSKFACILSNIFPISSP 281
PAL EEFSKF +L I+P P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 26.2 bits (55), Expect = 9.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 309 WSFSVSLLQPFWERKC 356
W +S+S L P W+++C
Sbjct: 140 WQYSLSFLAPKWDKQC 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,323,880
Number of Sequences: 27780
Number of extensions: 173611
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -