Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P23
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...   153   3e-38
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...   152   1e-37
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...   151   1e-37
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   2.1  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   2.7  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    27   3.6  
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi...    26   8.3  

>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score =  153 bits (372), Expect = 3e-38
 Identities = 70/99 (70%), Positives = 82/99 (82%)
 Frame = -3

Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITXP 43
           EYYA+LAK GVHHY+ NN++LGTACGKY+RV  L+I  P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDP 99


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score =  152 bits (368), Expect = 1e-37
 Identities = 69/99 (69%), Positives = 81/99 (81%)
 Frame = -3

Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITXP 43
           EYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I  P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDP 99


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score =  151 bits (367), Expect = 1e-37
 Identities = 69/99 (69%), Positives = 81/99 (81%)
 Frame = -3

Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITXP 43
           EYYA+LAK GVH Y+GNN++LGTACGKY+RV  L+I  P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDP 99


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 309 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 178
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 270 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 270 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324


>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 689

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -2

Query: 280 GDEIGKILLRIQ----ANFENSSTRQSKAGY 200
           G E+GKILLRI     AN+   S    +AGY
Sbjct: 501 GKEVGKILLRIDAKNPANYVMMSNLYGQAGY 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,496
Number of Sequences: 28952
Number of extensions: 160280
Number of successful extensions: 389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)