Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P22
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical p...    29   3.3  

>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 417 SSLQHINQ*VICGRDHRPSVVKLLTRKDKHILNKVFAFNQLELL-SNCTSPQVNY 578
           SS +H+ +    G+ HRPS++   + ++ H+  K +++  L     N T P + +
Sbjct: 43  SSGEHVPEYQASGQQHRPSIMSGQSHQNNHLPTKNYSYEPLRFSPPNVTPPPLQF 97


>U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical
           protein C43E11.9 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  CVARAPALTFQAQVCKFGMLKKFHYYI 116
           C+AR P L+F   + KF   KKFH  I
Sbjct: 57  CIAREPLLSFGTCLGKFTKSKKFHLQI 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,311
Number of Sequences: 27780
Number of extensions: 257945
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)