Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P21
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    28   0.72 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.1  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   6.7  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   6.7  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 22  SWYXQFKSKVASHRTXXXXXXXXXXXXXXXPATSTKQPKNIRNKSLNKIQL 174
           SW  Q K  + SH+T                + + K+ K++++K  N IQL
Sbjct: 101 SWLPQLKDLIESHKTICESTLAYESDQAMASSNTLKRIKDLKSKPKNIIQL 151


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 248 YSFLGLIAPSILDLIFKWERGLGRNNWILFKD 153
           + FL L APS     F+ E G+    W+   D
Sbjct: 820 HKFLDLSAPSTNSKDFRSEAGIPERRWLYISD 851


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 287 SLEQVIGLEGAFFYSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVA 114
           S  Q +GL   FF SF  L+  +  +    + R +  N  ++    ++ F+  F  +A
Sbjct: 188 STAQTVGLNTGFFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGYIKFWAYFTFIA 245


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 121 STKQPKNIRNKSLNKIQLFLPRPRSHLKMRSSMDGAMRPRKE*KKAPSRPITCSRLGN 294
           S+ QP N+ N S N  + F+P  ++ +   +S   A++P K  K  P    + S +GN
Sbjct: 539 SSVQPTNLPNGSTNGTETFIPPVQNSI---TSNKEAVKPIKN-KPKPISFESLSAVGN 592


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 248 YSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVAGXTQS 99
           Y F    AP +  LIF    G     WI F  L +  +G ++ VA   +S
Sbjct: 211 YYFNNYPAPQVFKLIFGGGEGFVLTPWIAF--LHMYMYGHYLHVAKNQKS 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,841
Number of Sequences: 5004
Number of extensions: 30875
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)