Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_P21
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335...    28   2.9  
04_01_0251 - 3294223-3294272,3295189-3295264,3295789-3296052,329...    27   8.7  

>09_02_0566 +
           10732359-10732497,10733114-10733267,10733448-10733519,
           10733701-10733769,10734430-10734501,10734590-10734661,
           10734769-10734840,10734928-10734999,10735121-10735192,
           10735293-10735364,10735435-10735506,10735826-10735897,
           10736039-10736104,10736638-10736676,10736787-10736845,
           10737166-10737545,10737629-10737824,10738012-10738179,
           10738618-10738736,10738873-10739083,10739163-10739403,
           10739830-10739980,10740469-10740828
          Length = 999

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 288 KS*TSYRPRRSFLLLLPWS 232
           KS TSYRP+  F+ LL W+
Sbjct: 863 KSNTSYRPKEDFVYLLDWA 881


>04_01_0251 -
           3294223-3294272,3295189-3295264,3295789-3296052,
           3296278-3296531,3296826-3296929,3297204-3297679
          Length = 407

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 118 TSTKQPKNIRNKSLNKIQLFLPRPRSHLKMRSSMDG 225
           TS KQ KNI  K++NK+  ++     H K+RS  +G
Sbjct: 140 TSNKQMKNIVQKTVNKMGTWV-MLFGHGKLRSKWEG 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,528,897
Number of Sequences: 37544
Number of extensions: 194222
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)